Factsheet for HORVU4Hr1G019840.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 1
plastid 1
vacuole 6
extracellular 3
endoplasmic reticulum 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

vacuole: 16581873

msms PMID: 16581873 doi

A Endler, S Meyer, S Schelbert, T Schneider, W Weschke, SW Peters, F Keller, S Baginsky, E Martinoia, UG Schmidt

University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1
HORVU6Hr1G051240.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166
AT2G16510.1	HORVU6Hr1G051240.4	AT4G32750.1	21798944
AT4G34720.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166
AT4G34720.1	HORVU6Hr1G051240.4	AT4G32750.1	21798944
AT4G38920.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166
AT4G38920.1	HORVU6Hr1G051240.4	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G108200.1	Wheat	golgi	100.0	100.0
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	99.39	99.39
Zm00001d004821_P002	Maize	extracellular	99.39	99.39
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	99.39	99.39
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	98.79	98.79
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	98.18	98.18
AT1G19910.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	95.76
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
AT4G38920.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
VIT_18s0001g02650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.73
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	95.15	95.15
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	94.55	95.12
KRH76682	Soybean	nucleus	94.55	95.12
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	94.55	94.55
AT1G75630.2	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	79.0
HORVU5Hr1G036250.1	Barley	plastid	85.45	77.9
Bra007980.1-P	Field mustard	cytosol	52.12	69.92
VIT_18s0001g15790.t01	Wine grape	cytosol	39.39	65.66
Bra012197.1-P	Field mustard	plastid	70.91	62.9
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.45	60.0
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	45.45	60.0
Bra010688.1-P	Field mustard	extracellular	28.48	57.32
CDY09753	Canola	endoplasmic reticulum, extracellular	43.03	54.2
CDX93877	Canola	endoplasmic reticulum	43.03	51.82
KRG89360	Soybean	extracellular	37.58	46.62
CDX99447	Canola	cytosol, vacuole	46.06	40.64
GSMUA_Achr3P19110_001	Banana	plasma membrane	12.73	40.38
HORVU3Hr1G053400.1	Barley	peroxisome, plasma membrane, plastid	32.73	30.51
HORVU3Hr1G053390.1	Barley	plastid	32.73	23.58
CDY54164	Canola	plasma membrane	55.76	22.06

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	EMBL:AK360833	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk
InterPro:F/V-ATP_Csub_sf	UniProt:F2DAC0	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0033177
GO:GO:0033179	EnsemblPlantsGene:HORVU4Hr1G019840	EnsemblPlants:HORVU4Hr1G019840.1	PFAM:PF00137	PRINTS:PR00122	PANTHER:PTHR10263
PANTHER:PTHR10263:SF14	SUPFAM:SSF81333	TIGRFAMs:TIGR01100	TMHMM:TMhelix	UniParc:UPI00001381EE	SEG:seg

Description

V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:F2DAC0]

Coordinates

chrchr4H:-:95320550..95323099

Molecular Weight (calculated)

16621.9 Da

IEP (calculated)

8.696

GRAVY (calculated)

1.008

Length

165 amino acids

Sequence
(BLAST)

001: MSSVFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKPYFLF DGYAHLSSGL
101: ACGLAGLAAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAD

Best Arabidopsis Sequence Match ( AT1G19910.1 )
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Arabidopsis Description

VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.