CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 6
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72369
CDX75281
CDY03088
CDY13500
CDY17621
CDY45015
CDY49321

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	CDY03088	AT2G01950.1	19000166
AT2G16510.1	CDY17621	AT2G01950.1	19000166
AT2G16510.1	CDX72369	AT4G32750.1	21798944
AT2G16510.1	CDX75281	AT4G32750.1	21798944
AT2G16510.1	CDY13500	AT4G32750.1	21798944
AT2G16510.1	CDY45015	AT4G32750.1	21798944
AT2G16510.1	CDY49321	AT4G32750.1	21798944
AT4G34720.1	CDY03088	AT2G01950.1	19000166
AT4G34720.1	CDY17621	AT2G01950.1	19000166
AT4G34720.1	CDX72369	AT4G32750.1	21798944
AT4G34720.1	CDX75281	AT4G32750.1	21798944
AT4G34720.1	CDY13500	AT4G32750.1	21798944
AT4G34720.1	CDY45015	AT4G32750.1	21798944
AT4G34720.1	CDY49321	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g15790.t01	Wine grape	cytosol	41.61	57.58
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	49.63	54.4
Zm00001d002976_P001	Maize	extracellular, plastid	38.69	54.08
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	51.09	50.36
CDX99447	Canola	cytosol, vacuole	64.96	47.59
CDY09753	Canola	endoplasmic reticulum, extracellular	43.8	45.8
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	54.01	45.12
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	54.01	45.12
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	53.28	44.24
TraesCS1D01G018300.1	Wheat	golgi	52.55	43.64
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.55	43.64
Os02t0550100-01	Rice	nucleus	52.55	43.11
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
Zm00001d004821_P002	Maize	extracellular	51.82	43.03
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
TraesCS4D01G108200.1	Wheat	golgi	51.82	43.03
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
HORVU4Hr1G019840.1	Barley	vacuole	51.82	43.03
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	51.82	43.03
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	51.82	42.77
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	51.09	42.42
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	51.09	42.42
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	50.37	41.82
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	51.09	40.7
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	47.45	39.39
HORVU5Hr1G036250.1	Barley	plastid	38.69	29.28
KRG89360	Soybean	extracellular	27.74	28.57
KXG21044	Sorghum	extracellular	18.25	20.66
CDY23329	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.87	10.73
CDY39890	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.87	10.73
CDX75251	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.87	10.73
CDX68854	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.87	10.73
CDY13493	Canola	cytosol, plasma membrane, vacuole	9.49	7.88
CDY54164	Canola	plasma membrane	23.36	7.67

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	GO:A0A078DY95	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk
EnsemblPlants:CDX93877	ProteinID:CDX93877	ProteinID:CDX93877.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150
GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0033177	GO:GO:0033179	EnsemblPlantsGene:GSBRNA2T00156687001
PFAM:PF00137	PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF14	TIGRFAMs:TIGR01100	TMHMM:TMhelix
UniParc:UPI0004EEB7F4	SEG:seg	:	:	:	:

Description

BnaC04g20360D

Coordinates

chrLK031878:-:305217..306531

Molecular Weight (calculated)

14367.1 Da

IEP (calculated)

5.036

GRAVY (calculated)

0.222

Length

137 amino acids

Sequence
(BLAST)

001: MSTFSGDETA PFFGFLGAAA ALVFSLVSEL YLSDSSFFGQ GFMGAAYGTA KSGVGVASMG VMRPELVMKS IVPVVMAGVL AERARYSLVT PHSFISSRLA
101: GIREDASHQS NSSGSCLDVK NSNGLADLNE PLKWQDS

Best Arabidopsis Sequence Match ( AT2G16510.1 )
(BLAST)

001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE

Arabidopsis Description

VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.