Factsheet for TraesCS1A01G019000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6B01G229000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS6B01G229000.1	AT4G32750.1	21798944
AT4G34720.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS6B01G229000.1	AT4G32750.1	21798944
AT4G38920.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS6B01G229000.1	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G018300.1	Wheat	golgi	100.0	100.0
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	98.18	98.18
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	98.18	98.18
AT1G19910.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	97.58	97.58
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	97.58	97.58
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	96.97	96.97
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.95
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.95
AT4G38920.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.95
VIT_18s0001g02650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.95
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.95
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.36
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.76	96.34
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	95.76	95.76
KRH76682	Soybean	nucleus	95.15	95.73
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	85.45	85.45
AT1G75630.2	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.76	79.0
Bra007980.1-P	Field mustard	cytosol	52.73	70.73
VIT_18s0001g15790.t01	Wine grape	cytosol	40.0	66.67
Bra012197.1-P	Field mustard	plastid	71.52	63.44
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	46.06	60.8
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.06	60.8
Bra010688.1-P	Field mustard	extracellular	28.48	57.32
CDY09753	Canola	endoplasmic reticulum, extracellular	43.64	54.96
CDX93877	Canola	endoplasmic reticulum	43.64	52.55
KRG89360	Soybean	extracellular	37.58	46.62
GSMUA_Achr3P19110_001	Banana	plasma membrane	13.33	42.31
CDX99447	Canola	cytosol, vacuole	46.67	41.18
TraesCS3A01G218100.1	Wheat	peroxisome, plasma membrane, plastid	32.12	29.94
CDY54164	Canola	plasma membrane	56.36	22.3

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	InterPro:F/V-ATP_Csub_sf
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0033177	GO:GO:0033179	PFAM:PF00137	PRINTS:PR00122
PANTHER:PTHR10263	PANTHER:PTHR10263:SF14	SUPFAM:SSF81333	TIGRFAMs:TIGR01100	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G019000
EnsemblPlants:TraesCS1A01G019000.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:9587067..9589291

Molecular Weight (calculated)

16607.8 Da

IEP (calculated)

8.696

GRAVY (calculated)

0.995

Length

165 amino acids

Sequence
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKPYFLF DGYAHLSSGL
101: ACGLAGLAAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAD

Best Arabidopsis Sequence Match ( AT1G19910.1 )
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Arabidopsis Description

VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.