CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72369
CDX75281
CDY03088
CDY13500
CDY17621
CDY45015
CDY49321

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	CDY03088	AT2G01950.1	19000166
AT2G16510.1	CDY17621	AT2G01950.1	19000166
AT2G16510.1	CDX72369	AT4G32750.1	21798944
AT2G16510.1	CDX75281	AT4G32750.1	21798944
AT2G16510.1	CDY13500	AT4G32750.1	21798944
AT2G16510.1	CDY45015	AT4G32750.1	21798944
AT2G16510.1	CDY49321	AT4G32750.1	21798944
AT4G34720.1	CDY03088	AT2G01950.1	19000166
AT4G34720.1	CDY17621	AT2G01950.1	19000166
AT4G34720.1	CDX72369	AT4G32750.1	21798944
AT4G34720.1	CDX75281	AT4G32750.1	21798944
AT4G34720.1	CDY13500	AT4G32750.1	21798944
AT4G34720.1	CDY45015	AT4G32750.1	21798944
AT4G34720.1	CDY49321	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93877	Canola	endoplasmic reticulum	47.59	64.96
VIT_18s0001g15790.t01	Wine grape	cytosol	30.48	57.58
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	39.57	53.24
Zm00001d002976_P001	Maize	extracellular, plastid	27.81	53.06
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	33.69	50.4
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	41.71	47.56
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	41.71	47.56
TraesCS1D01G018300.1	Wheat	golgi	41.18	46.67
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	41.18	46.67
Os02t0550100-01	Rice	nucleus	41.18	46.11
EES09364	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
Zm00001d004821_P002	Maize	extracellular	40.64	46.06
TraesCS5D01G130000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
TraesCS5A01G118600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
TraesCS4D01G108200.1	Wheat	golgi	40.64	46.06
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
TraesCS4A01G206900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
EES15730	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
KXG23066	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	40.64	46.06
HORVU4Hr1G019840.1	Barley	vacuole	40.64	46.06
CDY09753	Canola	endoplasmic reticulum, extracellular	32.09	45.8
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	40.64	45.78
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	40.11	45.45
TraesCS1B01G022800.1	Wheat	endoplasmic reticulum	40.11	45.45
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	39.57	44.85
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	40.11	43.6
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	36.9	41.82
HORVU5Hr1G036250.1	Barley	plastid	31.55	32.6
KRG89360	Soybean	extracellular	20.86	29.32
KXG21044	Sorghum	extracellular	16.04	24.79
CDX75251	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.9	14.69
CDY23329	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.9	14.69
CDX68854	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.9	14.69
CDY39890	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.9	14.69
CDY13493	Canola	cytosol, plasma membrane, vacuole	10.7	12.12
CDY54164	Canola	plasma membrane	20.86	9.35

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	GO:A0A078EEH1	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	EnsemblPlants:CDX99447
ProteinID:CDX99447	ProteinID:CDX99447.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0033179	EnsemblPlantsGene:GSBRNA2T00107784001	PRINTS:PR00122	PANTHER:PTHR10263
PANTHER:PTHR10263:SF21	TIGRFAMs:TIGR01100	TMHMM:TMhelix	UniParc:UPI0004EDC13C	SEG:seg	:

Description

BnaC01g11050D

Coordinates

chrLK031910:-:712400..713562

Molecular Weight (calculated)

19981.1 Da

IEP (calculated)

6.085

GRAVY (calculated)

0.248

Length

187 amino acids

Sequence
(BLAST)

001: MSTFSGDETA PFFGFLGAAA AVVFSSVSEL CLSDSSFFGQ GMGAAYGTAK SGVGVPSMGV MRPELVMKSI VPVVMAGVLA ERARYSLVTP HSFISSRLAG
101: IRDDASHQSN SSGSCLDVKN SNGLADLNEP LKWQDSEPVS LSRDMHSHYG ETMQMFKDSG CIKTQVKMAC QVVYVIVSMF CIFISFL

Best Arabidopsis Sequence Match ( AT2G16510.1 )
(BLAST)

001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE

Arabidopsis Description

VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.