Factsheet for Os02t0550100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 3
vacuole 4
extracellular 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0272400-00
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	Os10t0114400-01	AT2G01950.1	19000166
AT2G16510.1	Os02t0272400-00	AT4G32750.1	21798944
AT4G34720.1	Os10t0114400-01	AT2G01950.1	19000166
AT4G34720.1	Os02t0272400-00	AT4G32750.1	21798944
AT4G38920.1	Os10t0114400-01	AT2G01950.1	19000166
AT4G38920.1	Os02t0272400-00	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	97.01	97.59
AT1G19910.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.81	96.97
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.21	96.95
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.21	96.95
AT4G38920.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	95.21	96.95
VIT_18s0001g02650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.21	96.95
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	95.21	96.95
Os12t0168900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	95.21	96.36
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	94.61	96.34
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	94.61	95.76
Os11t0169900-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	94.61	95.76
KRH76682	Soybean	nucleus	94.01	95.73
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	94.01	95.15
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	73.65	88.49
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	83.83	84.85
AT1G75630.2	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	94.61	79.0
Bra007980.1-P	Field mustard	cytosol	52.69	71.54
VIT_18s0001g15790.t01	Wine grape	cytosol	39.52	66.67
KXG21044	Sorghum	extracellular	46.71	64.46
Bra012197.1-P	Field mustard	plastid	70.66	63.44
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	45.51	60.8
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.51	60.8
Zm00001d002976_P001	Maize	extracellular, plastid	34.73	59.18
Bra010688.1-P	Field mustard	extracellular	28.14	57.32
CDY09753	Canola	endoplasmic reticulum, extracellular	43.11	54.96
CDX93877	Canola	endoplasmic reticulum	43.11	52.55
KRG89360	Soybean	extracellular	37.13	46.62
GSMUA_Achr3P19110_001	Banana	plasma membrane	13.17	42.31
CDX99447	Canola	cytosol, vacuole	46.11	41.18
Os01t0610100-01	Rice	peroxisome, plasma membrane, plastid	32.93	31.25
CDY54164	Canola	plasma membrane	55.69	22.3

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	EntrezGene:4329623	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk
ProteinID:BAD16200.1	ProteinID:BAD33262.1	ProteinID:BAF09006.1	ProteinID:BAS79155.1	ProteinID:EEE57166.1	InterPro:F/V-ATP_Csub_sf
GO:GO:0000220	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006811
GO:GO:0007035	GO:GO:0008150	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019725	GO:GO:0033177	GO:GO:0033179	GO:GO:0046961
EnsemblPlantsGene:Os02g0550100	EnsemblPlants:Os02t0550100-01	PFAM:PF00137	PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF14
UniProt:Q6Z0Z9	SUPFAM:SSF81333	TIGRFAMs:TIGR01100	TMHMM:TMhelix	UniParc:UPI0000358B1A	RefSeq:XP_015622696.1
SEG:seg	:	:	:	:	:

Description

Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment). (Os02t0550100-01)

Coordinates

chr2:-:20685666..20687790

Molecular Weight (calculated)

16736.0 Da

IEP (calculated)

8.696

GRAVY (calculated)

0.991

Length

167 amino acids

Sequence
(BLAST)

001: MAGASTFSGD ETAPFFGFLG AAAALVFSCM GAAYGTAKSG VGVASMGVMR PELVMKSIVP VVMAGVLGIY GLIIAVIIST GINPKAKPYF LFDGYAHLSS
101: GLACGLAGLA AGMAIGIVGD AGVRANAQQP KLFVGMILIL IFAEALALYG LIVGIILSSR AGQSRAD

Best Arabidopsis Sequence Match ( AT1G19910.1 )
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Arabidopsis Description

VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.