Factsheet for Zm00001d002976_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 2
extracellular 3
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d053306_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT2G16510.1	Zm00001d053306_P001	AT4G32750.1	21798944
AT4G34720.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT4G34720.1	Zm00001d053306_P001	AT4G32750.1	21798944
AT4G38920.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT4G38920.1	Zm00001d053306_P001	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g15790.t01	Wine grape	cytosol	56.12	55.56
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	57.14	44.8
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	57.14	44.8
Zm00001d035702_P001	Maize	endoplasmic reticulum, extracellular, vacuole	60.2	42.45
CDY09753	Canola	endoplasmic reticulum, extracellular	52.04	38.93
CDX93877	Canola	endoplasmic reticulum	54.08	38.69
AT1G19910.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	59.18	35.15
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	59.18	35.15
Os05t0106100-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	59.18	34.94
AT4G38920.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	58.16	34.76
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	58.16	34.76
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	58.16	34.76
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	58.16	34.76
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	58.16	34.76
VIT_18s0001g02650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	58.16	34.76
Os02t0550100-01	Rice	nucleus	59.18	34.73
KRH76682	Soybean	nucleus	57.14	34.15
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	57.14	33.94
Zm00001d053010_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	57.14	33.94
Zm00001d023542_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	57.14	33.94
Zm00001d004821_P002	Maize	extracellular	57.14	33.94
Bra007980.1-P	Field mustard	cytosol	40.82	32.52
Zm00001d041882_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	56.12	31.98
AT1G75630.2	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	58.16	28.5
CDX99447	Canola	cytosol, vacuole	53.06	27.81
Bra012197.1-P	Field mustard	plastid	52.04	27.42
KRG89360	Soybean	extracellular	30.61	22.56
KXG21044	Sorghum	extracellular	25.51	20.66
Zm00001d011321_P002	Maize	peroxisome, plasma membrane, plastid	12.24	6.82
Zm00001d044445_P001	Maize	peroxisome, plasma membrane, plastid	12.24	6.82
CDY54164	Canola	plasma membrane	27.55	6.47
Bra010688.1-P	Field mustard	extracellular	2.04	2.44
GSMUA_Achr3P19110_001	Banana	plasma membrane	1.02	1.92

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	UniProt:A0A1D6E5T9	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991
GO:GO:0016020	GO:GO:0016021	GO:GO:0033177	GO:GO:0033179	ProteinID:ONM15830.1	PFAM:PF00137
PRINTS:PR00122	PANTHER:PTHR10263	PANTHER:PTHR10263:SF21	TMHMM:TMhelix	UniParc:UPI000844B97F	EnsemblPlantsGene:Zm00001d002976
EnsemblPlants:Zm00001d002976_P001	EnsemblPlants:Zm00001d002976_T001	:	:	:	:

Description

V-type proton ATPase subunit c4

Coordinates

chr2:-:28578457..28578824

Molecular Weight (calculated)

10140.8 Da

IEP (calculated)

10.061

GRAVY (calculated)

0.869

Length

98 amino acids

Sequence
(BLAST)

1: MVAYTFSGDK ATPFFGTATA LVFPVSTLQI SPPSLLCMGV AYETAKSGVG VASMGVMRLK LVMKSIVLVV MARVLGIYDL IIAAIISAGS TPRPSPTS

Best Arabidopsis Sequence Match ( AT1G19910.2 )
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VR

Arabidopsis Description

VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.