Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 3
- vacuole 4
- extracellular 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13486 | Canola | endoplasmic reticulum, extracellular, vacuole | 100.0 | 100.0 |
| VIT_18s0001g15790.t01 | Wine grape | cytosol | 48.8 | 61.62 |
| Zm00001d002976_P001 | Maize | extracellular, plastid | 44.8 | 57.14 |
| Zm00001d035702_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 61.6 | 55.4 |
| TraesCS1D01G018300.1 | Wheat | golgi | 60.8 | 46.06 |
| TraesCS1A01G019000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.8 | 46.06 |
| Os02t0550100-01 | Rice | nucleus | 60.8 | 45.51 |
| TraesCS4D01G108200.1 | Wheat | golgi | 60.0 | 45.45 |
| TraesCS4B01G110500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 45.45 |
| TraesCS4A01G206900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 45.45 |
| HORVU1Hr1G002500.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 45.45 |
| HORVU4Hr1G019840.1 | Barley | vacuole | 60.0 | 45.45 |
| Os05t0106100-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 45.18 |
| TraesCS1B01G022800.1 | Wheat | endoplasmic reticulum | 59.2 | 44.85 |
| TraesCS5B01G117600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| KXG23066 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| TraesCS5A01G118600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| TraesCS5D01G130000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| EES15730 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| EES09364 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| Zm00001d004821_P002 | Maize | extracellular | 59.2 | 44.85 |
| Bra025781.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| Zm00001d023542_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| Zm00001d053010_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 59.2 | 44.85 |
| Os12t0168900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 58.4 | 44.24 |
| Os11t0169900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 57.6 | 43.64 |
| Zm00001d041882_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 58.4 | 42.44 |
| Os01t0962300-00 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 56.0 | 42.42 |
| Bra007980.1-P | Field mustard | cytosol | 40.0 | 40.65 |
| HORVU5Hr1G036250.1 | Barley | plastid | 48.0 | 33.15 |
| Bra012197.1-P | Field mustard | plastid | 48.0 | 32.26 |
| KXG21044 | Sorghum | extracellular | 23.2 | 23.97 |
| Bra011352.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 18.4 | 12.99 |
| Bra037052.1-P | Field mustard | plasma membrane, vacuole | 4.8 | 7.32 |
| Bra010688.1-P | Field mustard | extracellular | 4.8 | 7.32 |
Protein Annotations
| Gene3D:1.20.120.610 | MapMan:24.1.1.1.2 | InterPro:ATPase_proteolipid_c-like_dom | InterPro:ATPase_proteolipid_csu | InterPro:ATPase_proteolipid_su_C_euk | EnsemblPlantsGene:Bra023950 |
| EnsemblPlants:Bra023950.1 | EnsemblPlants:Bra023950.1-P | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0033177 | GO:GO:0033179 | UniProt:M4E596 | PFAM:PF00137 | PRINTS:PR00122 | PANTHER:PTHR10263 |
| PANTHER:PTHR10263:SF36 | TIGRFAMs:TIGR01100 | TMHMM:TMhelix | UniParc:UPI0002540FF4 | SEG:seg | : |
Description
AT4G38920 (E=2e-021) AVA-P3, ATVHA-C3 | ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase
Coordinates
chrA03:+:28634064..28635179
Molecular Weight (calculated)
13195.2 Da
IEP (calculated)
9.166
GRAVY (calculated)
0.725
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTFSGDESA RFFGFIGAAA ALVFSVLFFV SSLRSGMGAA YGTAKSGVGV ASMGVMRPEL VMQSIVPVVM AGVLGIYGLI IAVIISTEST SSYFFSKLRI
101: SGIGQYTTGW CMVRRVSYNN CLANE
101: SGIGQYTTGW CMVRRVSYNN CLANE
001: MSTFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN PKAKSYYLFD GYAHLSSGLA
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
101: CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ SRAE
Arabidopsis Description
VHA-c3V-type proton ATPase subunit c1 [Source:UniProtKB/Swiss-Prot;Acc:P0DH92]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.