Factsheet for TraesCS1B01G022800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6B01G229000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16510.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G16510.1	TraesCS6B01G229000.1	AT4G32750.1	21798944
AT4G34720.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT4G34720.1	TraesCS6B01G229000.1	AT4G32750.1	21798944
AT4G38920.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT4G38920.1	TraesCS6B01G229000.1	AT4G32750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G018300.1	Wheat	golgi	96.97	96.97
TraesCS1A01G019000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	96.97	96.97
HORVU1Hr1G002500.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.36
TraesCS4B01G110500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	96.36	96.36
TraesCS5B01G117600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.76	95.76
AT1G19910.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	94.55	94.55
AT2G16510.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	93.33	93.9
AT4G34720.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	93.33	93.9
AT4G38920.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	93.33	93.9
VIT_18s0001g02650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	93.33	93.9
VIT_03s0038g00790.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	93.33	93.9
Solyc04g081090.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	93.33	93.33
Bra025781.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	93.33	93.33
VIT_18s0001g13630.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	92.73	93.29
KRH76682	Soybean	nucleus	92.12	92.68
Os01t0962300-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	82.42	82.42
AT1G75630.2	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	92.73	76.5
Bra007980.1-P	Field mustard	cytosol	52.12	69.92
VIT_18s0001g15790.t01	Wine grape	cytosol	38.79	64.65
Bra012197.1-P	Field mustard	plastid	69.09	61.29
CDY13486	Canola	endoplasmic reticulum, extracellular, vacuole	44.85	59.2
Bra023950.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.85	59.2
Bra010688.1-P	Field mustard	extracellular	28.48	57.32
CDY09753	Canola	endoplasmic reticulum, extracellular	43.03	54.2
CDX93877	Canola	endoplasmic reticulum	42.42	51.09
KRG89360	Soybean	extracellular	36.97	45.86
CDX99447	Canola	cytosol, vacuole	45.45	40.11
GSMUA_Achr3P19110_001	Banana	plasma membrane	12.12	38.46
TraesCS3B01G249000.1	Wheat	peroxisome, plasma membrane, plastid	31.52	29.38
CDY54164	Canola	plasma membrane	54.55	21.58

Protein Annotations

Gene3D:1.20.120.610	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom	InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	InterPro:F/V-ATP_Csub_sf
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0033177	GO:GO:0033179	PFAM:PF00137	PRINTS:PR00122
PANTHER:PTHR10263	PANTHER:PTHR10263:SF14	SUPFAM:SSF81333	TIGRFAMs:TIGR01100	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G022800
EnsemblPlants:TraesCS1B01G022800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:10111697..10114127

Molecular Weight (calculated)

16171.3 Da

IEP (calculated)

9.043

GRAVY (calculated)

0.942

Length

165 amino acids

Sequence
(BLAST)

001: MASTFSGDET APFFGFLGAA AALXXXXMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKPYFLF DGYAHLSSGL
101: ACGLAGLAAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAD

Best Arabidopsis Sequence Match ( AT1G19910.1 )
(BLAST)

001: MASTFSGDET APFFGFLGAA AALVFSCMGA AYGTAKSGVG VASMGVMRPE LVMKSIVPVV MAGVLGIYGL IIAVIISTGI NPKAKSYYLF DGYAHLSSGL
101: ACGLAGLSAG MAIGIVGDAG VRANAQQPKL FVGMILILIF AEALALYGLI VGIILSSRAG QSRAE

Arabidopsis Description

VHA-C2V-type proton ATPase proteolipid subunit [Source:UniProtKB/TrEMBL;Acc:A0A178W2T3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.