Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 2
- mitochondrion 1
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g04830.t01 | Wine grape | plasma membrane | 70.34 | 57.64 |
| Bra037052.1-P | Field mustard | plasma membrane, vacuole | 24.58 | 35.37 |
| KRH16027 | Soybean | golgi, plasma membrane, plastid | 50.0 | 33.52 |
| KRH05091 | Soybean | golgi, plasma membrane, plastid | 50.0 | 33.52 |
| VIT_09s0002g05720.t01 | Wine grape | extracellular, mitochondrion, plasma membrane, plastid | 49.15 | 32.77 |
| VIT_04s0008g04760.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 49.15 | 32.77 |
| EES01054 | Sorghum | peroxisome, plasma membrane, plastid | 46.61 | 31.25 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 45.76 | 31.03 |
| Zm00001d044445_P001 | Maize | peroxisome, plasma membrane, plastid | 45.76 | 30.68 |
| Zm00001d011321_P002 | Maize | peroxisome, plasma membrane, plastid | 45.76 | 30.68 |
| CDY39890 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.76 | 30.51 |
| CDY23329 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.76 | 30.51 |
| Bra011352.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 45.76 | 30.51 |
| CDX75251 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.76 | 30.51 |
| CDX68854 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.76 | 30.51 |
| CDY13493 | Canola | cytosol, plasma membrane, vacuole | 42.37 | 30.3 |
| HORVU3Hr1G053400.1 | Barley | peroxisome, plasma membrane, plastid | 44.92 | 29.94 |
| TraesCS3A01G218100.1 | Wheat | peroxisome, plasma membrane, plastid | 44.92 | 29.94 |
| TraesCS3B01G249000.1 | Wheat | peroxisome, plasma membrane, plastid | 44.92 | 29.94 |
| TraesCS3D01G234100.1 | Wheat | peroxisome, plasma membrane, plastid | 44.92 | 29.94 |
| Os01t0610100-01 | Rice | peroxisome, plasma membrane, plastid | 44.07 | 29.55 |
| AT4G32530.2 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 45.76 | 25.71 |
| GSMUA_Achr4P30710_001 | Banana | extracellular, plasma membrane, plastid | 46.61 | 24.77 |
| AT2G25610.2 | Thale cress | plastid | 45.76 | 23.79 |
| HORVU3Hr1G053390.1 | Barley | plastid | 44.92 | 23.14 |
| GSMUA_Achr7P09940_001 | Banana | golgi, plasma membrane | 45.76 | 21.6 |
| VIT_18s0001g02650.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 22.88 | 16.46 |
| VIT_18s0001g13630.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 22.88 | 16.46 |
| VIT_03s0038g00790.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 22.88 | 16.46 |
| VIT_18s0001g15790.t01 | Wine grape | cytosol | 11.02 | 13.13 |
| VIT_07s0141g00500.t01 | Wine grape | extracellular | 0.0 | 0.0 |
| VIT_18s0086g00420.t01 | Wine grape | extracellular, plasma membrane, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.610 | MapMan:24.1.1.1.2 | InterPro:ATPase_proteolipid_c-like_dom | ProteinID:CCB60819 | ProteinID:CCB60819.1 | InterPro:F/V-ATP_Csub_sf |
| UniProt:F6I1K2 | EMBL:FN596511 | GO:GO:0000220 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0007035 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019725 | GO:GO:0033177 | GO:GO:0046961 | PFAM:PF00137 |
| PANTHER:PTHR10263 | PANTHER:PTHR10263:SF34 | SUPFAM:SSF81333 | TMHMM:TMhelix | UniParc:UPI0002109978 | ArrayExpress:VIT_18s0086g00440 |
| EnsemblPlantsGene:VIT_18s0086g00440 | EnsemblPlants:VIT_18s0086g00440.t01 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:-:17738305..17740132
Molecular Weight (calculated)
12960.2 Da
IEP (calculated)
8.969
GRAVY (calculated)
0.601
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MVCTLLEGIR SLKGRNRVMN NMHKASGHSI LSVIFCEVVA IYGVIVAIIL QTKLESVPAS NIYAPESLRV GYAIFASGII MGFANLVCGS LVQMIFLYVG
101: SCRRRWTTTI NEQLEGSF
101: SCRRRWTTTI NEQLEGSF
001: MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY
101: DAESLRAGYA IFASGIIVGF ANLVCGSVST LFSFLTVLVF GFHCQICNRG PHFSCRLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII
201: MSAQATWPTK
101: DAESLRAGYA IFASGIIVGF ANLVCGSVST LFSFLTVLVF GFHCQICNRG PHFSCRLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII
201: MSAQATWPTK
Arabidopsis Description
ATPase, F0/V0 complex, subunit C protein [Source:UniProtKB/TrEMBL;Acc:B3H4N3]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.