Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 3
- mitochondrion 1
- peroxisome 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G218100.1 | Wheat | peroxisome, plasma membrane, plastid | 100.0 | 100.0 |
| HORVU3Hr1G053400.1 | Barley | peroxisome, plasma membrane, plastid | 100.0 | 100.0 |
| TraesCS3B01G249000.1 | Wheat | peroxisome, plasma membrane, plastid | 100.0 | 100.0 |
| Zm00001d044445_P001 | Maize | peroxisome, plasma membrane, plastid | 93.22 | 93.75 |
| Zm00001d011321_P002 | Maize | peroxisome, plasma membrane, plastid | 93.22 | 93.75 |
| EES01054 | Sorghum | peroxisome, plasma membrane, plastid | 93.22 | 93.75 |
| Os01t0610100-01 | Rice | peroxisome, plasma membrane, plastid | 92.09 | 92.61 |
| Bra037052.1-P | Field mustard | plasma membrane, vacuole | 42.37 | 91.46 |
| KRH16027 | Soybean | golgi, plasma membrane, plastid | 89.83 | 90.34 |
| KRH05091 | Soybean | golgi, plasma membrane, plastid | 89.83 | 90.34 |
| CDX68854 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 89.27 | 89.27 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 87.57 | 89.08 |
| CDY39890 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.7 | 88.7 |
| CDY23329 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.7 | 88.7 |
| CDX75251 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.7 | 88.7 |
| VIT_04s0008g04760.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 88.14 | 88.14 |
| Bra011352.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 88.14 | 88.14 |
| VIT_09s0002g05720.t01 | Wine grape | extracellular, mitochondrion, plasma membrane, plastid | 87.57 | 87.57 |
| PGSC0003DMT400019560 | Potato | plastid | 87.57 | 87.57 |
| PGSC0003DMT400073491 | Potato | plastid | 87.57 | 87.57 |
| Solyc06g067880.2.1 | Tomato | plastid | 86.44 | 86.44 |
| PGSC0003DMT400065655 | Potato | plastid | 86.44 | 85.47 |
| Solyc08g067480.2.1 | Tomato | plastid | 87.01 | 83.24 |
| VIT_18s0086g00420.t01 | Wine grape | extracellular, plasma membrane, plastid | 28.25 | 79.37 |
| HORVU3Hr1G053390.1 | Barley | plastid | 100.0 | 77.29 |
| AT4G32530.2 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 88.7 | 74.76 |
| AT2G25610.2 | Thale cress | plastid | 88.7 | 69.16 |
| GSMUA_Achr4P30710_001 | Banana | extracellular, plasma membrane, plastid | 86.44 | 68.92 |
| VIT_07s0141g00500.t01 | Wine grape | extracellular | 28.25 | 66.67 |
| CDY13493 | Canola | cytosol, plasma membrane, vacuole | 58.19 | 62.42 |
| GSMUA_Achr7P09940_001 | Banana | golgi, plasma membrane | 87.01 | 61.6 |
| VIT_18s0086g00440.t01 | Wine grape | plasma membrane | 29.94 | 44.92 |
| VIT_19s0014g04830.t01 | Wine grape | plasma membrane | 31.64 | 38.89 |
| TraesCS4D01G108200.1 | Wheat | golgi | 30.51 | 32.73 |
| TraesCS5D01G130000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 30.51 | 32.73 |
| TraesCS1D01G018300.1 | Wheat | golgi | 29.94 | 32.12 |
Protein Annotations
| Gene3D:1.20.120.610 | MapMan:24.1.1.1.2 | InterPro:ATPase_proteolipid_c-like_dom | InterPro:ATPase_proteolipid_csu | InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015078 | GO:GO:0015991 |
| GO:GO:0016020 | GO:GO:0033177 | GO:GO:0033179 | PFAM:PF00137 | PRINTS:PR00122 | PANTHER:PTHR10263 |
| PANTHER:PTHR10263:SF18 | SUPFAM:SSF81333 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3D01G234100 | EnsemblPlants:TraesCS3D01G234100.1 | SEG:seg |
Description
No Description!
Coordinates
chr3D:-:323084194..323087653
Molecular Weight (calculated)
18317.7 Da
IEP (calculated)
8.324
GRAVY (calculated)
1.012
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDYSSSWA RALVHISPYT FSAIGIAVSI GVSVLGAAWG IFITGSSLIG AAIKAPRITS KNLISVIFCE AVAIYGVIVA IILQTKLESV PTSRMHDPES
101: MRAGYAIFAS GLIVGFANLV CGVCVGIIGS SCALSDAQNS TLFVKILVIE IFGSALGLFG VIVGIIMSAQ ATWPTKV
101: MRAGYAIFAS GLIVGFANLV CGVCVGIIGS SCALSDAQNS TLFVKILVIE IFGSALGLFG VIVGIIMSAQ ATWPTKV
001: MVIEFTRIHQ RVIWSCSISD RTGSVNHLLL RKTEKETNQI HSYQRDREKM SGVAIHASSW GAALVRISPY TFSAIGIAIS IGVSVLGAAW GIYITGSSLI
101: GAAIEAPRIT SKNLISVIFC EAVAIYGVIV AIILQTKLES VPSSKMYDAE SLRAGYAIFA SGIIVGFANL VCGLCVGIIG SSCALSDAQN STLFVKILVI
201: EIFGSALGLF GVIVGIIMSA QATWPTK
101: GAAIEAPRIT SKNLISVIFC EAVAIYGVIV AIILQTKLES VPSSKMYDAE SLRAGYAIFA SGIIVGFANL VCGLCVGIIG SSCALSDAQN STLFVKILVI
201: EIFGSALGLF GVIVGIIMSA QATWPTK
Arabidopsis Description
ATPase, F0/V0 complex, subunit C protein [Source:TAIR;Acc:AT2G25610]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.