Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G037020.1 | Barley | plastid | 87.17 | 74.09 |
| PGSC0003DMT400041230 | Potato | plastid | 58.29 | 60.56 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 74.87 | 52.83 |
| TraesCS6B01G234800.1 | Wheat | cytosol, plasma membrane, plastid | 95.72 | 32.55 |
| TraesCS1B01G163800.1 | Wheat | cytosol, plasma membrane, plastid | 93.05 | 31.69 |
| TraesCS1B01G163900.1 | Wheat | cytosol, plasma membrane, plastid | 89.3 | 30.42 |
| TraesCS6B01G208100.1 | Wheat | golgi, plasma membrane, plastid | 92.51 | 26.09 |
| TraesCS3B01G185500.1 | Wheat | plastid | 94.65 | 23.6 |
| ATCG00350.1 | Thale cress | cytosol, plasma membrane, plastid | 93.05 | 23.2 |
| TraesCS2B01G487400.1 | Wheat | plastid | 35.29 | 8.99 |
| KRG88966 | Soybean | cytosol, plastid | 1.07 | 1.61 |
| CDY43223 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1130.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR036408 | PFAM:PF00223 |
| PRINTS:PR00257 | ScanProsite:PS00419 | InterPro:PSI_PsaA | InterPro:PSI_PsaA/B | InterPro:PSI_PsaA/B_CS | InterPro:PSI_PsaA/B_sf |
| PANTHER:PTHR30128 | PANTHER:PTHR30128:SF8 | SUPFAM:SSF81558 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1B01G189100 | EnsemblPlants:TraesCS1B01G189100.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:338941367..338941930
Molecular Weight (calculated)
19958.2 Da
IEP (calculated)
7.675
GRAVY (calculated)
0.416
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MSALGRPQDM FSDTAIQLQP IFAQWVQNIH ATAPGVTAPG ATTSTSLACG GGELVAVGGK VALLPIPLGT ADFLVHHIHA FTIHVTVLIL LKGVLFARSS
101: RLIPDKANLG FRFPCDGPGR GGTCQVSAWD HVFLGLFWMY NAISVVIFHF SWKMQSDVWG TISDQGVATH ITGGNFAQSS ITINGWL
101: RLIPDKANLG FRFPCDGPGR GGTCQVSAWD HVFLGLFWMY NAISVVIFHF SWKMQSDVWG TISDQGVATH ITGGNFAQSS ITINGWL
001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
Arabidopsis Description
PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.