CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77209
CDY22740	plastid
CDY22909	plastid
CDY31733
CDY54164
CDY54970	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00350.1	CDY54164	AT1G75630.2	22897245
ATCG00350.1	CDX77209	AT2G28800.1	15988575
ATCG00350.1	CDY31733	AT2G28800.1	15988575
ATCG00350.1	CDY22740	AT4G15510.1	23221595
ATCG00350.1	CDY22909	AT4G15510.1	23221595
ATCG00350.1	CDY54970	AT4G15510.1	23221595
ATCG00350.1	CDY22740	AT4G15510.1	23221595
ATCG00350.1	CDY22909	AT4G15510.1	23221595
ATCG00350.1	CDY54970	AT4G15510.1	23221595

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88966	Soybean	cytosol, plastid	57.33	69.35
CDY67706	Canola	plasma membrane, vacuole	96.0	24.78
CDX80066	Canola	cytosol, plasma membrane, plastid	96.0	19.2
CDX99951	Canola	cytosol, plasma membrane, plastid	96.0	19.2
CDY15767	Canola	cytosol, plasma membrane, plastid	96.0	19.2
CDY29455	Canola	cytosol, plasma membrane, plastid	96.0	19.2
ATCG00350.1	Thale cress	cytosol, plasma membrane, plastid	94.67	18.93
CDX99952	Canola	cytosol, endoplasmic reticulum, vacuole	47.33	10.53
CDY15768	Canola	cytosol, endoplasmic reticulum, vacuole	47.33	10.53
CDY29456	Canola	cytosol, endoplasmic reticulum, vacuole	47.33	10.53
CDY39485	Canola	mitochondrion, plastid	11.33	2.51
CDY67707	Canola	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	0.0	0.0
HORVU6Hr1G037020.1	Barley	plastid	0.0	0.0
PGSC0003DMT400041230	Potato	plastid	0.0	0.0
TraesCS1B01G189100.1	Wheat	cytosol, plasma membrane, plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	GO:A0A078I279	UniProt:A0A078I279	EnsemblPlants:CDY43223	ProteinID:CDY43223
ProteinID:CDY43223.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00076239001	InterPro:IPR036408	PFAM:PF00223
PRINTS:PR00257	InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8
MetaCyc:PWY-101	SUPFAM:SSF81558	SignalP:SignalP-noTM	UniParc:UPI0004EED5B7	SEG:seg	:

Description

BnaC08g04960DBnaC08g04960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I279]

Coordinates

chrLK032549:+:137650..138170

Molecular Weight (calculated)

16663.2 Da

IEP (calculated)

7.190

GRAVY (calculated)

0.071

Length

150 amino acids

Sequence
(BLAST)

001: MLNHHLAGLL GLGSLSWAGH QVHVSLPINQ FLNAGVDPKE IPLPHEFILN RDLLAQLYPS FAERETPLFT LNWSKYSLFT FRGGLDPVTG GLWLTDTAHH
101: HLAIAILFLI AGHMYRTNWG IGHGLKDILE AHKGPFTGQG HKGLYEILTT

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.