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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400001063
PGSC0003DMT400027723 plastid

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATCG00350.1 PGSC0003DMT400001063 AT2G28800.1 15988575
ATCG00350.1 PGSC0003DMT400027723 AT4G15510.1 23221595
ATCG00350.1 PGSC0003DMT400027723 AT4G15510.1 23221595
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G189100.1 Wheat cytosol, plasma membrane, plastid 60.56 58.29
GSMUA_AchrUn_... Banana endoplasmic reticulum 81.11 55.09
PGSC0003DMT400013730 Potato plastid 59.44 46.32
HORVU6Hr1G037020.1 Barley plastid 53.89 44.09
ATCG00350.1 Thale cress cytosol, plasma membrane, plastid 92.22 22.13
CDY43223 Canola extracellular 0.0 0.0
KRG88966 Soybean cytosol, plastid 0.0 0.0
Protein Annotations
Gene3D:1.20.1130.10MapMan:35.1GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009522GO:GO:0009579GO:GO:0009987
GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0046872InterPro:IPR036408UniProt:M1BB39
PFAM:PF00223EnsemblPlantsGene:PGSC0003DMG400015960PGSC:PGSC0003DMG400015960EnsemblPlants:PGSC0003DMT400041230PRINTS:PR00257ScanProsite:PS00419
InterPro:PSI_PsaAInterPro:PSI_PsaA/BInterPro:PSI_PsaA/B_CSInterPro:PSI_PsaA/B_sfPANTHER:PTHR30128PANTHER:PTHR30128:SF8
SUPFAM:SSF81558TMHMM:TMhelixUniParc:UPI0002954EC8SEG:seg::
Description
Photosystem I P700 chlorophyll a apoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015960]
Coordinates
chr7:+:14163601..14164143
Molecular Weight (calculated)
19675.9 Da
IEP (calculated)
8.510
GRAVY (calculated)
0.224
Length
180 amino acids
Sequence
(BLAST)
001: MVRDYDPTTR YNDLLDRVLR HRDAIISHLN WACIFLGFHS FGLYIHNDTM STLGRPQDMF LDTAIQLQPV FAQWIQNTHA LAPGATAPGA TASTSLTWGG
101: GDLVAVGGKV ALLPIPLGTA DFLVHHIHAF TIHVTVLILL KGVLFARSSR LIPDKANLGF RFPCDGPGRG GTCLINSKYL
Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)
001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG
Arabidopsis Description
PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.