Factsheet for PGSC0003DMT400013730

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G022470.1	Barley	cytosol, plastid	21.21	94.23
KRH55005	Soybean	cytosol, plasma membrane	35.93	90.22
PGSC0003DMT400041230	Potato	plastid	46.32	59.44
Solyc12g033040.1.1	Tomato	cytosol	36.36	45.41
HORVU3Hr1G004680.1	Barley	cytosol, plasma membrane, plastid	87.01	45.37
HORVU4Hr1G045310.1	Barley	extracellular	64.07	40.66
Bra041122.1-P	Field mustard	cytosol, vacuole	87.88	37.18
Zm00001d000272_P001	Maize	plastid	87.88	36.45
TraesCS6B01G234800.1	Wheat	cytosol, plasma membrane, plastid	86.58	36.36
CDY67706	Canola	plasma membrane, vacuole	89.18	35.46
TraesCS1B01G163900.1	Wheat	cytosol, plasma membrane, plastid	83.55	35.15
TraesCS1B01G163800.1	Wheat	cytosol, plasma membrane, plastid	82.68	34.79
TraesCS6B01G208100.1	Wheat	golgi, plasma membrane, plastid	84.42	29.41
CDY29455	Canola	cytosol, plasma membrane, plastid	89.18	27.47
CDY15767	Canola	cytosol, plasma membrane, plastid	89.18	27.47
CDX99951	Canola	cytosol, plasma membrane, plastid	89.18	27.47
CDX80066	Canola	cytosol, plasma membrane, plastid	89.18	27.47
AGP50755	Barley	plastid	87.88	27.07
HORVU6Hr1G049200.2	Barley	cytosol, plasma membrane, plastid	87.88	27.07
TraesCS3B01G185500.1	Wheat	plastid	87.45	26.93
TraesCSU01G200900.1	Wheat	cytosol, plasma membrane, plastid	87.45	26.93
CAA33996	Rice	plasma membrane	87.01	26.8
TraesCS5D01G010900.1	Wheat	plastid	87.01	26.8
HORVU5Hr1G064640.2	Barley	cytosol, plasma membrane, plastid	87.01	26.8
CDY67707	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1130.10	MapMan:35.1	EntrezGene:4099969	wikigene:4099969	ProteinID:ABB90041	ProteinID:ABB90041.1
ProteinID:ABD47057	ProteinID:ABD47057.1	ProteinID:AEB72139	ProteinID:AEB72139.1	ProteinID:AEB72225	ProteinID:AEB72225.1
EMBL:DQ231562	EMBL:DQ386163	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009522	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0016491	GO:GO:0018298	GO:GO:0019538	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR036408	EMBL:JF772170	EMBL:JF772171
UniProt:M1A397	PFAM:PF00223	EnsemblPlantsGene:PGSC0003DMG400005372	PGSC:PGSC0003DMG400005372	EnsemblPlants:PGSC0003DMT400013730	PRINTS:PR00257
InterPro:PSI_PsaA	InterPro:PSI_PsaA/B	InterPro:PSI_PsaA/B_sf	PANTHER:PTHR30128	PANTHER:PTHR30128:SF8	SUPFAM:SSF81558
TMHMM:TMhelix	UniParc:UPI000296F929	EntrezGene:psaA	wikigene:psaA	SEG:seg	:

Description

Photosystem I P700 chlorophyll a apoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005372]

Coordinates

chr7:+:20447837..20448532

Molecular Weight (calculated)

25436.5 Da

IEP (calculated)

7.155

GRAVY (calculated)

0.097

Length

231 amino acids

Sequence
(BLAST)

001: MYRTNWGIGH GLKDILEAHK GPFTGQGHKG LYEILTTSWH AQLSLNLAML GSLTIVVAHH MYSMPPYPYL ATDYGTQLSL FTHHMWIGGF LIVGAAAHAA
101: IFMVRDYDPT TRYNDLLDRV LRHRDAIISH LNWACIFLGF HSFGLYIHND TMSALGRPQD MFSDTAIQLQ PVFAQWIQNT HALAPGATAP GATASTSLTW
201: GGGDLVAVGF PHEFIFSSGS VGKTLYHHLG S

Best Arabidopsis Sequence Match ( ATCG00350.1 )
(BLAST)

001: MIIRSPEPEV KILVDRDPIK TSFEEWAKPG HFSRTIAKGP DTTTWIWNLH ADAHDFDSHT SDLEEISRKV FSAHFGQLSI IFLWLSGMYF HGARFSNYEA
101: WLSDPTHIGP SAQVVWPIVG QEILNGDVGG GFRGIQITSG FFQIWRASGI TSELQLYCTA IGALVFAALM LFAGWFHYHK AAPKLAWFQD VESMLNHHLA
201: GLLGLGSLSW AGHQVHVSLP INQFLNAGVD PKEIPLPHEF ILNRDLLAQL YPSFAEGATP FFTLNWSKYS EFLTFRGGLD PVTGGLWLTD IAHHHLAIAI
301: LFLIAGHMYR TNWGIGHGIK DILEAHKGPF TGQGHKGLYE ILTTSWHAQL SLNLAMLGSL TIIVAHHMYS MPPYPYLATD YATQLSLFTH HMWIGGFLIV
401: GAAAHAAIFM VRDYDPTNRY NDLLDRVLRH RDAIISHLNW VCIFLGFHSF GLYIHNDTMS ALGRPQDMFS DTAIQLQPVF AQWIQNTHAL APGVTAPGET
501: ASTSLTWGGG ELVAVGGKVA LLPIPLGTAD FLVHHIHAFT IHVTVLILLK GVLFARSSRL IPDKANLGFR FPCDGPGRGG TCQVSAWDHV FLGLFWMYNA
601: ISVVIFHFSW KMQSDVWGSI SDQGVVTHIT GGNFAQSSIT INGWLRDFLW AQASQVIQSY GSSLSAYGLF FLGAHFVWAF SLMFLFSGRG YWQELIESIV
701: WAHNKLKVAP ATQPRALSII QGRAVGVTHY LLGGIATTWA FFLARIIAVG

Arabidopsis Description

PSAAPhotosystem I P700 chlorophyll a apoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P56766]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.