Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31733 | Canola | plastid | 96.17 | 96.17 |
| AT2G28800.1 | Thale cress | plastid | 88.74 | 85.28 |
| Solyc11g066110.1.1 | Tomato | plastid | 71.4 | 70.92 |
| VIT_06s0004g04460.t01 | Wine grape | plastid | 72.52 | 70.77 |
| PGSC0003DMT400001063 | Potato | plastid | 71.4 | 70.76 |
| KRH24811 | Soybean | plastid | 70.95 | 70.0 |
| KRH29812 | Soybean | plastid | 70.5 | 69.56 |
| HORVU3Hr1G013690.6 | Barley | mitochondrion | 64.64 | 68.82 |
| TraesCS3B01G089800.1 | Wheat | plastid | 66.67 | 65.92 |
| GSMUA_Achr9P03990_001 | Banana | mitochondrion, plastid | 65.77 | 65.77 |
| TraesCS3A01G075700.1 | Wheat | plastid | 66.44 | 65.7 |
| Os01t0151200-01 | Rice | plasma membrane | 67.79 | 65.58 |
| TraesCS3D01G075800.1 | Wheat | plastid | 66.44 | 65.56 |
| Zm00001d039852_P001 | Maize | plastid | 66.22 | 64.62 |
| KXG31875 | Sorghum | plastid | 66.22 | 64.62 |
| Zm00001d008625_P001 | Maize | mitochondrion | 66.44 | 63.44 |
| CDY27589 | Canola | plastid | 52.25 | 47.35 |
| CDX84950 | Canola | plastid | 52.03 | 47.14 |
| CDY03882 | Canola | plastid | 52.7 | 47.08 |
| CDY51594 | Canola | plastid | 52.48 | 46.79 |
| GSMUA_Achr5P28630_001 | Banana | cytosol, nucleus, plasma membrane | 66.22 | 42.0 |
Protein Annotations
| MapMan:23.1.7.5 | GO:A0A078CME2 | EnsemblPlants:CDX77209 | ProteinID:CDX77209 | ProteinID:CDX77209.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0032977 | EnsemblPlantsGene:GSBRNA2T00127872001 |
| InterPro:Membr_insert_YidC/Oxa1_C | PFAM:PF02096 | PANTHER:PTHR12428 | PANTHER:PTHR12428:SF19 | TIGRFAMs:TIGR03592 | TMHMM:TMhelix |
| UniParc:UPI0004EF2D03 | InterPro:YidC/ALB3/OXA1/COX18 | SEG:seg | : | : | : |
Description
BnaC04g40040D
Coordinates
chrLK031809:-:2113587..2116660
Molecular Weight (calculated)
48036.8 Da
IEP (calculated)
9.811
GRAVY (calculated)
-0.065
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MARVLISSPS SFFGSPLLKP SSSSRHVAGG SLQFRNKHLV RFSLNEIPPL HGSVDIGAIL TRAESLLYTV ADAAVVSGAA DSAVSTDPAV QKSGGWFGFI
101: SDGMELVLKF LKDGLTAVHV PYAYGFAIIL LTIIVKAATY PLTKQQVEST MAMQNLQPKI KAIQQRYAGN QERIQLETSR LYKQAGVNPL AGCLPTLATI
201: PVWIGLYQAL SNVANEGLFT EGFFWIPSLG GPTSIAARQS GSGVSWLFPF VDGHPPLGWG DTAAYLVLPV LLIVSQYVSM EIMKPPQTDD PAQKNTLLVF
301: KFLPLMIGYF ALSVPSGLSI YWFTNNVLST AQQVWLRKLG GAAPAVNENA SGIITAGRAK RSIAQPDDAG ERFRQLKEQE KRSKKNKAVA KDTVELLESQ
401: SESEEGSDDE EEEVREGALA SSTSKPLPGV GQRRSKRSKR KRAV
101: SDGMELVLKF LKDGLTAVHV PYAYGFAIIL LTIIVKAATY PLTKQQVEST MAMQNLQPKI KAIQQRYAGN QERIQLETSR LYKQAGVNPL AGCLPTLATI
201: PVWIGLYQAL SNVANEGLFT EGFFWIPSLG GPTSIAARQS GSGVSWLFPF VDGHPPLGWG DTAAYLVLPV LLIVSQYVSM EIMKPPQTDD PAQKNTLLVF
301: KFLPLMIGYF ALSVPSGLSI YWFTNNVLST AQQVWLRKLG GAAPAVNENA SGIITAGRAK RSIAQPDDAG ERFRQLKEQE KRSKKNKAVA KDTVELLESQ
401: SESEEGSDDE EEEVREGALA SSTSKPLPGV GQRRSKRSKR KRAV
001: MARVLVSSPS SFFGSPLIKP SSSLRHSGVG GGGTAQFLPY RSNNNKLFTT STTVRFSLNE IPPFHGLDSS VDIGAIFTRA ESLLYTIADA AVVGADSVVT
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
Arabidopsis Description
ALB3ALB3 [Source:UniProtKB/TrEMBL;Acc:A0A178VUV3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.