Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018169.1-P | Field mustard | cytosol, extracellular | 100.0 | 100.0 |
| CDY58300 | Canola | plastid | 83.65 | 84.47 |
| CDY38074 | Canola | cytosol, mitochondrion, plastid | 82.69 | 83.5 |
| CDX86122 | Canola | cytosol | 99.04 | 82.4 |
| AT3G47070.1 | Thale cress | cytosol | 71.15 | 74.0 |
| CDX80332 | Canola | plastid | 60.58 | 62.38 |
| CDY54176 | Canola | plastid | 60.58 | 62.38 |
| KRH30324 | Soybean | cytosol, extracellular, mitochondrion | 49.04 | 55.43 |
| VIT_06s0004g06170.t01 | Wine grape | extracellular | 45.19 | 53.41 |
| GSMUA_AchrUn_... | Banana | extracellular | 48.08 | 48.54 |
| KRG98326 | Soybean | cytosol, plastid | 50.96 | 47.32 |
| Solyc06g076790.1.1 | Tomato | nucleus, plastid | 47.12 | 46.23 |
| PGSC0003DMT400078225 | Potato | plastid | 46.15 | 46.15 |
| PGSC0003DMT400010663 | Potato | plastid | 43.27 | 45.0 |
Protein Annotations
| EnsemblPlants:CDX99069 | EnsemblPlantsGene:GSBRNA2T00107208001 | InterPro:TSP9 | InterPro:TSP9_sf | PANTHER:PTHR36370 | PANTHER:PTHR36370:SF1 |
| PFAM:PF11493 | ProteinID:CDX99069 | ProteinID:CDX99069.1 | SEG:seg | SUPFAM:SSF144256 | UniParc:UPI000253F474 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA06g17600D
Coordinates
chrLK031908:+:163317..163919
Molecular Weight (calculated)
10890.0 Da
IEP (calculated)
10.476
GRAVY (calculated)
-0.469
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSLLMSFA PATVRVYATT KGTSGGAKEE KNPLDFVLGY LTKQDQFYET DPILKKVEEK GGTRSGTTGG RGTVRGGKSS APVPVAPKKN DGGFAGLGGF
101: FNKK
101: FNKK
1: MVSSLLMSFA PATVRVYATS TKGGSGGPKE EKNPIDFVLG FMTKQDQFYE TNPLLKKVDE KEGTTTGGRG TVRGGKNSAP TPVPKKSEGG FGGLGSLFKK
Arabidopsis Description
Thylakoid soluble phosphoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SD66]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.