Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018169.1-P | Field mustard | cytosol, extracellular | 82.4 | 99.04 |
| CDX99069 | Canola | cytosol, extracellular | 82.4 | 99.04 |
| CDY58300 | Canola | plastid | 68.8 | 83.5 |
| CDY38074 | Canola | cytosol, mitochondrion, plastid | 68.0 | 82.52 |
| AT3G47070.1 | Thale cress | cytosol | 58.4 | 73.0 |
| CDX80332 | Canola | plastid | 50.4 | 62.38 |
| CDY54176 | Canola | plastid | 50.4 | 62.38 |
| KRH30324 | Soybean | cytosol, extracellular, mitochondrion | 40.8 | 55.43 |
| VIT_06s0004g06170.t01 | Wine grape | extracellular | 37.6 | 53.41 |
| KRG98326 | Soybean | cytosol, plastid | 44.0 | 49.11 |
| GSMUA_AchrUn_... | Banana | extracellular | 39.2 | 47.57 |
| Solyc06g076790.1.1 | Tomato | nucleus, plastid | 39.2 | 46.23 |
| PGSC0003DMT400078225 | Potato | plastid | 38.4 | 46.15 |
| PGSC0003DMT400010663 | Potato | plastid | 36.0 | 45.0 |
Protein Annotations
| EnsemblPlants:CDX86122 | EnsemblPlantsGene:GSBRNA2T00144172001 | InterPro:TSP9 | InterPro:TSP9_sf | PANTHER:PTHR36370 | PANTHER:PTHR36370:SF1 |
| PFAM:PF11493 | ProteinID:CDX86122 | ProteinID:CDX86122.1 | SEG:seg | SUPFAM:SSF144256 | UniParc:UPI0004EED3BE |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC03g56370D
Coordinates
chrLK031844:-:1657743..1658355
Molecular Weight (calculated)
13337.8 Da
IEP (calculated)
10.077
GRAVY (calculated)
-0.625
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQQEIYTDT HTESSKGEIT RMVSSLLMSF APATVRVYAT TKGTSGGAKE EKNPLDFVLG YLTKQDQFYE TDPILKKVEE KGGTRSGTTG GRGTVRGGKS
101: TAPVPVAPKK NDGGFAGLGG FFNKK
101: TAPVPVAPKK NDGGFAGLGG FFNKK
1: MVSSLLMSFA PATVRVYATS TKGGSGGPKE EKNPIDFVLG FMTKQDQFYE TNPLLKKVDE KEGTTTGGRG TVRGGKNSAP TPVPKKSEGG FGGLGSLFKK
Arabidopsis Description
Thylakoid soluble phosphoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SD66]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.