Factsheet for Solyc06g076790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078225	Potato	plastid	85.85	87.5
VIT_06s0004g06170.t01	Wine grape	extracellular	53.77	64.77
KRH30324	Soybean	cytosol, extracellular, mitochondrion	50.94	58.7
GSMUA_AchrUn_...	Banana	extracellular	50.94	52.43
KRG98326	Soybean	cytosol, plastid	53.77	50.89
Bra002617.1-P	Field mustard	plastid	47.17	49.51
CDX80332	Canola	plastid	47.17	49.51
CDY54176	Canola	plastid	47.17	49.51
Bra018169.1-P	Field mustard	cytosol, extracellular	46.23	47.12
CDX99069	Canola	cytosol, extracellular	46.23	47.12
Bra019494.1-P	Field mustard	plastid	44.34	45.63
CDY58300	Canola	plastid	44.34	45.63
AT3G47070.1	Thale cress	cytosol	40.57	43.0
CDY38074	Canola	cytosol, mitochondrion, plastid	41.51	42.72
CDX86122	Canola	cytosol	46.23	39.2

Protein Annotations

EnsemblPlants:Solyc06g076790.1.1	EnsemblPlantsGene:Solyc06g076790.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941
GO:GO:0016020	InterPro:TSP9	InterPro:TSP9_sf	PANTHER:PTHR36370	PANTHER:PTHR36370:SF1	PFAM:PF11493
SEG:seg	SUPFAM:SSF144256	UniParc:UPI00027672E8	UniProt:K4CA37	MapMan:35.2	:

Description

No Description!

Coordinates

chr6:-:47701917..47702237

Molecular Weight (calculated)

11177.2 Da

IEP (calculated)

10.433

GRAVY (calculated)

-0.417

Length

106 amino acids

Sequence
(BLAST)

001: MASLNMFVSP IATVTAQQHR SRVYTAATAS KSSGGSTEEK SLLDFILGAL QKQDQLLETD PLLKKVEDKS VSTTSSGRKN SVAVPPKKNS NGGGFAGFGG
101: LFNKKD

Best Arabidopsis Sequence Match ( AT3G47070.1 )
(BLAST)

1: MVSSLLMSFA PATVRVYATS TKGGSGGPKE EKNPIDFVLG FMTKQDQFYE TNPLLKKVDE KEGTTTGGRG TVRGGKNSAP TPVPKKSEGG FGGLGSLFKK

Arabidopsis Description

Thylakoid soluble phosphoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SD66]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.