Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58300 | Canola | plastid | 95.15 | 95.15 |
| Bra019494.1-P | Field mustard | plastid | 87.38 | 87.38 |
| CDX99069 | Canola | cytosol, extracellular | 83.5 | 82.69 |
| AT3G47070.1 | Thale cress | cytosol | 67.96 | 70.0 |
| CDX86122 | Canola | cytosol | 82.52 | 68.0 |
| CDX80332 | Canola | plastid | 60.19 | 61.39 |
| CDY54176 | Canola | plastid | 60.19 | 61.39 |
| KRH30324 | Soybean | cytosol, extracellular, mitochondrion | 49.51 | 55.43 |
| VIT_06s0004g06170.t01 | Wine grape | extracellular | 41.75 | 48.86 |
| GSMUA_AchrUn_... | Banana | extracellular | 48.54 | 48.54 |
| KRG98326 | Soybean | cytosol, plastid | 50.49 | 46.43 |
| PGSC0003DMT400078225 | Potato | plastid | 44.66 | 44.23 |
| Solyc06g076790.1.1 | Tomato | nucleus, plastid | 42.72 | 41.51 |
| PGSC0003DMT400010663 | Potato | plastid | 39.81 | 41.0 |
Protein Annotations
| EnsemblPlants:CDY38074 | EnsemblPlantsGene:GSBRNA2T00065339001 | InterPro:TSP9 | InterPro:TSP9_sf | PANTHER:PTHR36370 | PANTHER:PTHR36370:SF1 |
| PFAM:PF11493 | ProteinID:CDY38074 | ProteinID:CDY38074.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF144256 |
| UniParc:UPI0004EE8BAE | UniProt:A0A078HL91 | MapMan:35.2 | : | : | : |
Description
BnaC03g75130DBnaC03g75130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL91]
Coordinates
chrLK032415:-:288131..288860
Molecular Weight (calculated)
10642.8 Da
IEP (calculated)
10.341
GRAVY (calculated)
-0.385
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSLLMSFA PATVRAYATT AKGASGGAKE EKNPLDFMLG YLTKQDQFYE TDPILKKVEK EQGTTGGRGT VRGGGKSAAP VPVAAKKNDG GGFGGLAGLF
101: NKK
101: NKK
1: MVSSLLMSFA PATVRVYATS TKGGSGGPKE EKNPIDFVLG FMTKQDQFYE TNPLLKKVDE KEGTTTGGRG TVRGGKNSAP TPVPKKSEGG FGGLGSLFKK
Arabidopsis Description
Thylakoid soluble phosphoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SD66]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.