Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38074 | Canola | cytosol, mitochondrion, plastid | 95.15 | 95.15 |
| Bra019494.1-P | Field mustard | plastid | 90.29 | 90.29 |
| CDX99069 | Canola | cytosol, extracellular | 84.47 | 83.65 |
| AT3G47070.1 | Thale cress | cytosol | 69.9 | 72.0 |
| CDX86122 | Canola | cytosol | 83.5 | 68.8 |
| CDX80332 | Canola | plastid | 63.11 | 64.36 |
| CDY54176 | Canola | plastid | 63.11 | 64.36 |
| KRH30324 | Soybean | cytosol, extracellular, mitochondrion | 51.46 | 57.61 |
| VIT_06s0004g06170.t01 | Wine grape | extracellular | 43.69 | 51.14 |
| GSMUA_AchrUn_... | Banana | extracellular | 50.49 | 50.49 |
| KRG98326 | Soybean | cytosol, plastid | 52.43 | 48.21 |
| PGSC0003DMT400078225 | Potato | plastid | 47.57 | 47.12 |
| PGSC0003DMT400010663 | Potato | plastid | 43.69 | 45.0 |
| Solyc06g076790.1.1 | Tomato | nucleus, plastid | 45.63 | 44.34 |
Protein Annotations
| EnsemblPlants:CDY58300 | EnsemblPlantsGene:GSBRNA2T00023367001 | InterPro:TSP9 | InterPro:TSP9_sf | PANTHER:PTHR36370 | PANTHER:PTHR36370:SF1 |
| PFAM:PF11493 | ProteinID:CDY58300 | ProteinID:CDY58300.1 | SEG:seg | SUPFAM:SSF144256 | UniParc:UPI0004EDEF1F |
| UniProt:A0A078J602 | MapMan:35.2 | : | : | : | : |
Description
BnaA06g38740DBnaA06g38740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J602]
Coordinates
chrLK033654:+:43618..44337
Molecular Weight (calculated)
10638.8 Da
IEP (calculated)
10.188
GRAVY (calculated)
-0.347
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSLLMSFA PATVRVYATT AKGASGGAKE EKSPLDFVLG YLTKQDQFYE TDPILKKVEK EQGTTGGRGT VRGGGKSAAP VPVAPKKDDG GGFGGLAGLF
101: NKK
101: NKK
1: MVSSLLMSFA PATVRVYATS TKGGSGGPKE EKNPIDFVLG FMTKQDQFYE TNPLLKKVDE KEGTTTGGRG TVRGGKNSAP TPVPKKSEGG FGGLGSLFKK
Arabidopsis Description
Thylakoid soluble phosphoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SD66]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.