Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018169.1-P | Field mustard | cytosol, extracellular | 74.0 | 71.15 |
| CDX99069 | Canola | cytosol, extracellular | 74.0 | 71.15 |
| CDY58300 | Canola | plastid | 72.0 | 69.9 |
| CDY38074 | Canola | cytosol, mitochondrion, plastid | 70.0 | 67.96 |
| Bra019494.1-P | Field mustard | plastid | 67.0 | 65.05 |
| CDX86122 | Canola | cytosol | 73.0 | 58.4 |
| KRH30324 | Soybean | cytosol, extracellular, mitochondrion | 48.0 | 52.17 |
| VIT_06s0004g06170.t01 | Wine grape | extracellular | 41.0 | 46.59 |
| GSMUA_AchrUn_... | Banana | extracellular | 46.0 | 44.66 |
| KRG98326 | Soybean | cytosol, plastid | 49.0 | 43.75 |
| PGSC0003DMT400078225 | Potato | plastid | 43.0 | 41.35 |
| PGSC0003DMT400010663 | Potato | plastid | 41.0 | 41.0 |
| Solyc06g076790.1.1 | Tomato | nucleus, plastid | 43.0 | 40.57 |
Protein Annotations
| MapMan:35.2 | EntrezGene:823860 | ProteinID:AEE78240.1 | ArrayExpress:AT3G47070 | EnsemblPlantsGene:AT3G47070 | RefSeq:AT3G47070 |
| TAIR:AT3G47070 | RefSeq:AT3G47070-TAIR-G | EnsemblPlants:AT3G47070.1 | TAIR:AT3G47070.1 | EMBL:AY086566 | EMBL:AY142645 |
| ProteinID:CAB61953.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 |
| GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009941 | GO:GO:0016020 |
| RefSeq:NP_190291.1 | PFAM:PF11493 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR36370 | PANTHER:PTHR36370:SF1 | UniProt:Q9SD66 | SUPFAM:SSF144256 |
| InterPro:TSP9 | InterPro:TSP9_sf | UniParc:UPI00000AC3FE | SEG:seg | : | : |
Description
Thylakoid soluble phosphoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SD66]
Coordinates
chr3:-:17336592..17337733
Molecular Weight (calculated)
10530.6 Da
IEP (calculated)
10.436
GRAVY (calculated)
-0.527
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MVSSLLMSFA PATVRVYATS TKGGSGGPKE EKNPIDFVLG FMTKQDQFYE TNPLLKKVDE KEGTTTGGRG TVRGGKNSAP TPVPKKSEGG FGGLGSLFKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.