Factsheet for VIT_06s0004g06170.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 2
mitochondrion 2
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30324	Soybean	cytosol, extracellular, mitochondrion	72.73	69.57
GSMUA_AchrUn_...	Banana	extracellular	70.45	60.19
KRG98326	Soybean	cytosol, plastid	73.86	58.04
PGSC0003DMT400078225	Potato	plastid	63.64	53.85
Solyc06g076790.1.1	Tomato	nucleus, plastid	64.77	53.77
PGSC0003DMT400010663	Potato	plastid	55.68	49.0
Bra002617.1-P	Field mustard	plastid	55.68	48.51
CDX80332	Canola	plastid	55.68	48.51
CDY54176	Canola	plastid	55.68	48.51
Bra018169.1-P	Field mustard	cytosol, extracellular	53.41	45.19
CDX99069	Canola	cytosol, extracellular	53.41	45.19
Bra019494.1-P	Field mustard	plastid	52.27	44.66
CDY58300	Canola	plastid	51.14	43.69
CDY38074	Canola	cytosol, mitochondrion, plastid	48.86	41.75
AT3G47070.1	Thale cress	cytosol	46.59	41.0
CDX86122	Canola	cytosol	53.41	37.6

Protein Annotations

EntrezGene:100265554	wikigene:100265554	MapMan:35.2	EMBL:AM445236	ProteinID:CAN78614	ProteinID:CAN78614.1
ProteinID:CCB43497	ProteinID:CCB43497.1	UniProt:F6GUT9	EMBL:FN594951	EntrezGene:LOC100265554	wikigene:LOC100265554
PFAM:PF11493	PANTHER:PTHR36370	PANTHER:PTHR36370:SF5	SUPFAM:SSF144256	TIGR:TC62163	InterPro:TSP9
InterPro:TSP9_sf	UniParc:UPI00015C7CDC	ArrayExpress:VIT_06s0004g06170	EnsemblPlantsGene:VIT_06s0004g06170	EnsemblPlants:VIT_06s0004g06170.t01	unigene:Vvi.762
RefSeq:XP_002280087	RefSeq:XP_002280087.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:6961354..6961957

Molecular Weight (calculated)

9075.0 Da

IEP (calculated)

10.498

GRAVY (calculated)

-0.320

Length

88 amino acids

Sequence
(BLAST)

1: MASLTIAFAP AAGRVFAATA EKSSGGSGEK GILDWILGGL QKEDQMLETD PILKKVEEKN GGSNGGRKNS VVVPPKKKGG FGGLFAKK

Best Arabidopsis Sequence Match ( AT3G47070.1 )
(BLAST)

1: MVSSLLMSFA PATVRVYATS TKGGSGGPKE EKNPIDFVLG FMTKQDQFYE TNPLLKKVDE KEGTTTGGRG TVRGGKNSAP TPVPKKSEGG FGGLGSLFKK

Arabidopsis Description

Thylakoid soluble phosphoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SD66]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.