CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000947.1-P	Field mustard	plastid	97.56	97.56
CDX91881	Canola	plastid	95.73	95.73
CDY53863	Canola	plastid	91.46	88.76
CDY01956	Canola	plastid	90.85	88.17
CDY07178	Canola	plastid	90.24	88.1
CDY48508	Canola	plastid	86.59	87.65
AT4G01150.1	Thale cress	plastid	87.2	87.2
Os02t0731600-01	Rice	cytosol	47.56	72.22
PGSC0003DMT400000589	Potato	plastid	67.07	65.87
KRH47985	Soybean	plastid	64.02	64.42
KRH06541	Soybean	plastid	63.41	63.8
Solyc01g095430.2.1	Tomato	plastid	65.24	62.94
VIT_16s0050g02240.t01	Wine grape	plastid	60.37	61.49
VIT_15s0046g01470.t01	Wine grape	plastid	61.59	60.84
EER89571	Sorghum	plastid	53.66	59.46
Solyc10g011770.2.1	Tomato	plastid	60.98	59.17
Zm00001d037323_P001	Maize	plastid	53.05	58.78
Zm00001d051785_P001	Maize	plastid	56.1	58.6
Zm00001d027456_P001	Maize	plastid	51.83	56.67
TraesCS6A01G292800.2	Wheat	plastid	53.66	56.05
TraesCS6B01G323200.2	Wheat	plastid	53.05	55.41
TraesCS6D01G273900.1	Wheat	plastid	53.66	55.0
Os06t0264800-01	Rice	plastid	51.22	53.85
GSMUA_Achr10P...	Banana	plastid	56.71	53.45
TraesCS7A01G206700.1	Wheat	plastid	51.22	53.16
TraesCS7D01G209600.1	Wheat	plastid	50.61	52.53
TraesCS7B01G114100.1	Wheat	plastid	50.61	52.53
GSMUA_Achr3P20270_001	Banana	plastid	53.66	52.07
KXG30819	Sorghum	plastid	54.88	51.72
GSMUA_Achr7P18720_001	Banana	plastid	56.1	39.48
HORVU6Hr1G073100.4	Barley	plastid	57.32	33.45
CDY52984	Canola	plastid	26.22	29.66
CDY67261	Canola	plastid	25.61	28.97
CDX90383	Canola	plastid	34.15	28.57
CDY27520	Canola	plastid	26.22	27.39
CDY27519	Canola	mitochondrion	21.34	27.34
CDY52513	Canola	plastid	32.93	26.6
CDY48012	Canola	plastid	26.83	26.35
CDY41562	Canola	plastid	29.27	26.23
CDX80050	Canola	plastid	29.27	26.23

Protein Annotations

EnsemblPlants:CDX74360	EnsemblPlantsGene:GSBRNA2T00112165001	GO:A0A078CC18	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0009579	InterPro:CAAD_dom	InterPro:CURT1	ncoils:Coil	PANTHER:PTHR33222	PANTHER:PTHR33222:SF4
PFAM:PF14159	ProteinID:CDX74360	ProteinID:CDX74360.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE3003
MapMan:35.1	:	:	:	:	:

Description

BnaA03g26870D

Coordinates

chrLK031800:-:2377772..2379049

Molecular Weight (calculated)

17717.7 Da

IEP (calculated)

9.863

GRAVY (calculated)

0.205

Length

164 amino acids

Sequence
(BLAST)

001: MAMTVAASMA VMVPRVPSVS ARCSAVPYLP PRSFGRSSFT VPVKLLSGNG LHKVELMKTR ASSSDETSTA IGTNELFTDL KEKWDGLENK TTVIIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIDSLKKKI AGTE

Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)

001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE

Arabidopsis Description

CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.