Factsheet for TraesCS6D01G273900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G346800.3
TraesCS1B01G360800.1
TraesCS1D01G349700.1
TraesCS3A01G151200.1
TraesCS3A01G278800.1
TraesCS3B01G178100.1
TraesCS3B01G313000.1
TraesCS3D01G159100.1
TraesCS3D01G279100.1
TraesCS7A01G341800.1
TraesCS7B01G241100.1
TraesCS7D01G337800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01150.1	TraesCS1A01G346800.3	AT5G41600.1	21798944
AT4G01150.1	TraesCS1B01G360800.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS1D01G349700.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS3A01G151200.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS3A01G278800.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS3B01G178100.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS3B01G313000.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS3D01G159100.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS3D01G279100.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS7A01G341800.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS7B01G241100.1	AT5G41600.1	21798944
AT4G01150.1	TraesCS7D01G337800.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G323200.2	Wheat	plastid	90.0	91.72
TraesCS6A01G292800.2	Wheat	plastid	89.38	91.08
Os02t0731600-01	Rice	cytosol	56.25	83.33
Zm00001d051785_P001	Maize	plastid	80.0	81.53
KXG30819	Sorghum	plastid	78.75	72.41
TraesCS7D01G209600.1	Wheat	plastid	68.12	68.99
PGSC0003DMT400000589	Potato	plastid	59.38	56.89
VIT_16s0050g02240.t01	Wine grape	plastid	56.25	55.9
GSMUA_Achr10P...	Banana	plastid	60.0	55.17
Solyc01g095430.2.1	Tomato	plastid	58.12	54.71
AT4G01150.1	Thale cress	plastid	55.62	54.27
CDX74360	Canola	plasma membrane, plastid	55.0	53.66
GSMUA_Achr3P20270_001	Banana	plastid	56.25	53.25
CDX91881	Canola	plastid	54.38	53.05
Bra000947.1-P	Field mustard	plastid	54.38	53.05
KRH06541	Soybean	plastid	53.75	52.76
KRH47985	Soybean	plastid	53.75	52.76
VIT_15s0046g01470.t01	Wine grape	plastid	54.38	52.41
Bra037380.1-P	Field mustard	plastid	52.5	51.85
CDY48508	Canola	plastid	52.5	51.85
Solyc10g011770.2.1	Tomato	plastid	54.38	51.48
CDY53863	Canola	plastid	53.75	50.89
CDY01956	Canola	plastid	53.75	50.89
Bra008533.1-P	Field mustard	plastid	53.75	50.89
CDY07178	Canola	plastid	53.12	50.6
HORVU6Hr1G073100.4	Barley	plastid	88.75	50.53
GSMUA_Achr7P18720_001	Banana	plastid	58.75	40.34
TraesCS7D01G177300.1	Wheat	plastid	31.25	29.41
TraesCS2D01G238700.1	Wheat	plastid	25.0	27.59
TraesCS7D01G177200.1	Wheat	plastid	29.38	27.49
TraesCS1D01G203500.2	Wheat	plastid	28.75	27.06
TraesCS5D01G253600.1	Wheat	plastid	30.0	26.23
TraesCS3D01G296900.1	Wheat	plastid	23.12	24.5
TraesCS6D01G293900.1	Wheat	plastid	28.75	24.08

Protein Annotations

EnsemblPlants:TraesCS6D01G273900.1	EnsemblPlantsGene:TraesCS6D01G273900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0009579
InterPro:CAAD_dom	InterPro:CURT1	ncoils:Coil	PANTHER:PTHR33222	PANTHER:PTHR33222:SF4	PFAM:PF14159
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6D:+:382562623..382563928

Molecular Weight (calculated)

16993.4 Da

IEP (calculated)

7.355

GRAVY (calculated)

0.107

Length

160 amino acids

Sequence
(BLAST)

001: MATTACSTAL LGGAGARLPV RAAAAPRSVL LPRRNFSPLG LQGAHDTPRL SLLRAKASSD DTSAASGDEL VDDLKAKWDA VENKSTVLTY AGGAIVAVWF
101: SSVIVGAINS LPLLPKIMEL VGLGYSGWFV YRYLLFKERR EELADDVESL KKSIAGTEAE

Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)

001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE

Arabidopsis Description

CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.