Factsheet for VIT_16s0050g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00640.t01
VIT_07s0031g02730.t01
VIT_15s0046g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01150.1	VIT_02s0025g00640.t01	AT5G41600.1	21798944
AT4G01150.1	VIT_07s0031g02730.t01	AT5G41600.1	21798944
AT4G01150.1	VIT_15s0046g01760.t01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0731600-01	Rice	cytosol	45.34	67.59
KRH47985	Soybean	plastid	67.7	66.87
VIT_15s0046g01470.t01	Wine grape	plastid	68.32	66.27
KRH06541	Soybean	plastid	66.46	65.64
PGSC0003DMT400000589	Potato	plastid	65.84	63.47
AT4G01150.1	Thale cress	plastid	63.98	62.8
Solyc01g095430.2.1	Tomato	plastid	65.22	61.76
Bra037380.1-P	Field mustard	plastid	61.49	61.11
CDY48508	Canola	plastid	61.49	61.11
CDX91881	Canola	plastid	62.11	60.98
CDY07178	Canola	plastid	63.35	60.71
CDX74360	Canola	plasma membrane, plastid	61.49	60.37
Bra008533.1-P	Field mustard	plastid	62.73	59.76
CDY53863	Canola	plastid	62.73	59.76
Bra000947.1-P	Field mustard	plastid	60.87	59.76
EER89571	Sorghum	plastid	54.66	59.46
Zm00001d051785_P001	Maize	plastid	57.76	59.24
CDY01956	Canola	plastid	62.11	59.17
Zm00001d037323_P001	Maize	plastid	54.04	58.78
GSMUA_Achr3P20270_001	Banana	plastid	60.87	57.99
TraesCS6D01G273900.1	Wheat	plastid	55.9	56.25
GSMUA_Achr10P...	Banana	plastid	60.25	55.75
TraesCS6A01G292800.2	Wheat	plastid	54.04	55.41
TraesCS6B01G323200.2	Wheat	plastid	54.04	55.41
KXG30819	Sorghum	plastid	59.63	55.17
Zm00001d027456_P001	Maize	plastid	49.69	53.33
TraesCS7A01G206700.1	Wheat	plastid	52.17	53.16
TraesCS7D01G209600.1	Wheat	plastid	52.17	53.16
TraesCS7B01G114100.1	Wheat	plastid	52.17	53.16
Os06t0264800-01	Rice	plastid	50.93	52.56
GSMUA_Achr7P18720_001	Banana	plastid	61.49	42.49
HORVU6Hr1G073100.4	Barley	plastid	55.28	31.67
VIT_09s0002g04360.t01	Wine grape	plastid	27.33	30.14
VIT_15s0048g02500.t01	Wine grape	plastid	31.06	29.24
VIT_00s0199g00110.t01	Wine grape	plastid	35.4	27.94
VIT_00s0199g00150.t01	Wine grape	plastid	35.4	27.94

Protein Annotations

EntrezGene:100246662	wikigene:100246662	MapMan:35.1	EMBL:AM424642	InterPro:CAAD_dom	ProteinID:CAN64486
ProteinID:CAN64486.1	ProteinID:CCB47778	ProteinID:CCB47778.1	InterPro:CURT1	UniProt:F6H6H6	EMBL:FN595243
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100246662	wikigene:LOC100246662	PFAM:PF14159	PANTHER:PTHR33222	PANTHER:PTHR33222:SF4	TIGR:TC62130
TMHMM:TMhelix	UniParc:UPI0001985826	ArrayExpress:VIT_16s0050g02240	EnsemblPlantsGene:VIT_16s0050g02240	EnsemblPlants:VIT_16s0050g02240.t01	RefSeq:XP_002264814
RefSeq:XP_002264814.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:-:19197889..19201009

Molecular Weight (calculated)

17451.0 Da

IEP (calculated)

9.694

GRAVY (calculated)

0.070

Length

161 amino acids

Sequence
(BLAST)

001: MATAYTAGAS SMVAAISRPR LPSTSFHPRS SLPNLPPRPS SLSLKLFSDS NRFSSLQIKA SSDESGPVDA GELFSDLMER WDALENKSTV FIYGGGAIVA
101: VWLSSIIVSA INSVPLLPKV MELVGLGYTG WFVYRYLLFK SSRKELATDI EALKKKISGS E

Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)

001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE

Arabidopsis Description

CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.