Factsheet for PGSC0003DMT400000589

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400032086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01150.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g095430.2.1	Tomato	plastid	95.21	93.53
Os02t0731600-01	Rice	cytosol	46.11	71.3
VIT_15s0046g01470.t01	Wine grape	plastid	68.86	69.28
KRH47985	Soybean	plastid	67.07	68.71
CDX91881	Canola	plastid	66.47	67.68
KRH06541	Soybean	plastid	65.87	67.48
CDX74360	Canola	plasma membrane, plastid	65.87	67.07
Bra000947.1-P	Field mustard	plastid	65.27	66.46
AT4G01150.1	Thale cress	plastid	65.27	66.46
VIT_16s0050g02240.t01	Wine grape	plastid	63.47	65.84
Bra008533.1-P	Field mustard	plastid	65.27	64.5
CDY53863	Canola	plastid	65.27	64.5
Zm00001d051785_P001	Maize	plastid	60.48	64.33
CDY01956	Canola	plastid	64.67	63.91
EER89571	Sorghum	plastid	55.69	62.84
Bra037380.1-P	Field mustard	plastid	60.48	62.35
CDY48508	Canola	plastid	60.48	62.35
Zm00001d037323_P001	Maize	plastid	55.09	62.16
CDY07178	Canola	plastid	62.28	61.9
GSMUA_Achr3P20270_001	Banana	plastid	61.68	60.95
TraesCS6A01G292800.2	Wheat	plastid	56.29	59.87
TraesCS6D01G273900.1	Wheat	plastid	56.89	59.38
TraesCS6B01G323200.2	Wheat	plastid	55.69	59.24
GSMUA_Achr10P...	Banana	plastid	61.68	59.2
Zm00001d027456_P001	Maize	plastid	51.5	57.33
TraesCS7A01G206700.1	Wheat	plastid	53.89	56.96
TraesCS7D01G209600.1	Wheat	plastid	53.89	56.96
TraesCS7B01G114100.1	Wheat	plastid	53.29	56.33
KXG30819	Sorghum	plastid	58.68	56.32
Os06t0264800-01	Rice	plastid	52.1	55.77
GSMUA_Achr7P18720_001	Banana	plastid	60.48	43.35
PGSC0003DMT400016846	Potato	plastid	43.11	39.78
HORVU6Hr1G073100.4	Barley	plastid	58.08	34.52
PGSC0003DMT400029398	Potato	plastid	32.93	30.56
PGSC0003DMT400041783	Potato	plastid	31.74	6.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400000589	EnsemblPlantsGene:PGSC0003DMG400000204	EntrezGene:102596366	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	InterPro:CAAD_dom	InterPro:CURT1	ncoils:Coil
PANTHER:PTHR33222	PANTHER:PTHR33222:SF4	PFAM:PF14159	PGSC:PGSC0003DMG400000204	RefSeq:XP_006339666.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000294BA4A	UniProt:M0ZGZ6	MapMan:35.1	:	:

Description

Thylakoid membrane phosphoprotein 14 kDa, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400000204]

Coordinates

chr1:-:73015925..73019833

Molecular Weight (calculated)

17806.6 Da

IEP (calculated)

9.845

GRAVY (calculated)

0.203

Length

167 amino acids

Sequence
(BLAST)

001: MAAASTSMAA TAVFASRFPL SSTTKAAPAR CSALPYLPPR LSATAFPSSL KFAVPKRSSL LQVKASSSEE SGAVDTSELL TDLKEKWDAL DNKSTVIVYG
101: GGAIVAVWLS SVVVGAINSV PLLPKIMELV GLGYTGWFVY RYLLFKSSRK ELAEDIEQLK KKIAGTE

Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)

001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE

Arabidopsis Description

CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.