CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3
peroxisome 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89811
EES19841
KXG31516
KXG33320
OQU84758

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01150.1	EER89811	AT5G41600.1	21798944
AT4G01150.1	EES19841	AT5G41600.1	21798944
AT4G01150.1	KXG31516	AT5G41600.1	21798944
AT4G01150.1	KXG33320	AT5G41600.1	21798944
AT4G01150.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037323_P001	Maize	plastid	97.97	97.97
Zm00001d027456_P001	Maize	plastid	89.86	88.67
Os06t0264800-01	Rice	plastid	85.81	81.41
TraesCS7D01G209600.1	Wheat	plastid	85.81	80.38
TraesCS7B01G114100.1	Wheat	plastid	85.81	80.38
TraesCS7A01G206700.1	Wheat	plastid	85.81	80.38
KXG30819	Sorghum	plastid	80.41	68.39
GSMUA_Achr10P...	Banana	plastid	68.24	58.05
KRH47985	Soybean	plastid	62.16	56.44
AT4G01150.1	Thale cress	plastid	62.16	56.1
KRH06541	Soybean	plastid	61.49	55.83
PGSC0003DMT400000589	Potato	plastid	62.84	55.69
GSMUA_Achr3P20270_001	Banana	plastid	62.84	55.03
VIT_16s0050g02240.t01	Wine grape	plastid	59.46	54.66
CDX74360	Canola	plasma membrane, plastid	59.46	53.66
Bra000947.1-P	Field mustard	plastid	58.78	53.05
VIT_15s0046g01470.t01	Wine grape	plastid	59.46	53.01
Solyc01g095430.2.1	Tomato	plastid	60.81	52.94
Solyc10g011770.2.1	Tomato	plastid	60.14	52.66
CDY48508	Canola	plastid	57.43	52.47
Bra037380.1-P	Field mustard	plastid	57.43	52.47
CDX91881	Canola	plastid	58.11	52.44
Bra008533.1-P	Field mustard	plastid	58.78	51.48
CDY53863	Canola	plastid	58.78	51.48
CDY01956	Canola	plastid	58.11	50.89
CDY07178	Canola	plastid	57.43	50.6
EES15027	Sorghum	mitochondrion	44.59	42.04
GSMUA_Achr7P18720_001	Banana	plastid	63.51	40.34
EER97176	Sorghum	mitochondrion, plastid	31.76	31.97
KXG39014	Sorghum	plastid	29.73	25.29
OQU87593	Sorghum	plastid	25.0	24.67
EER99031	Sorghum	mitochondrion, plastid	29.05	22.51
KXG31149	Sorghum	nucleus	35.81	15.27

Protein Annotations

MapMan:35.1	EntrezGene:8065769	UniProt:C5Z843	InterPro:CAAD_dom	InterPro:CURT1	ncoils:Coil
EnsemblPlants:EER89571	ProteinID:EER89571	ProteinID:EER89571.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	PFAM:PF14159	PANTHER:PTHR33222	PANTHER:PTHR33222:SF4
EnsemblPlantsGene:SORBI_3010G109500	unigene:Sbi.3282	TMHMM:TMhelix	UniParc:UPI0001A89A13	RefSeq:XP_002438204.1	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:10898172..10900001

Molecular Weight (calculated)

15922.5 Da

IEP (calculated)

9.409

GRAVY (calculated)

0.238

Length

148 amino acids

Sequence
(BLAST)

001: MAATAYSVAL LGGARLPAAP RSALLPRRSV CQLRLQDAPR LSLLRAKAAS EDTSASGDEL IEDLKAKWDA IEDKPTVLLY GGGAIVALWL TSVVVGAINA
101: VPLLPKILEL VGLGYTGWFV YRYLLFKESR KELAADIETL KKKIAGTE

Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)

001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE

Arabidopsis Description

CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.