Factsheet for Solyc01g095430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g081730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01150.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000589	Potato	plastid	93.53	95.21
Solyc10g011770.2.1	Tomato	plastid	72.35	72.78
Os02t0731600-01	Rice	cytosol	43.53	68.52
KRH47985	Soybean	plastid	64.12	66.87
VIT_15s0046g01470.t01	Wine grape	plastid	64.71	66.27
CDX91881	Canola	plastid	63.53	65.85
KRH06541	Soybean	plastid	62.94	65.64
CDX74360	Canola	plasma membrane, plastid	62.94	65.24
VIT_16s0050g02240.t01	Wine grape	plastid	61.76	65.22
Bra000947.1-P	Field mustard	plastid	62.35	64.63
AT4G01150.1	Thale cress	plastid	62.35	64.63
CDY53863	Canola	plastid	62.35	62.72
Bra008533.1-P	Field mustard	plastid	62.35	62.72
Zm00001d051785_P001	Maize	plastid	57.65	62.42
CDY01956	Canola	plastid	61.76	62.13
EER89571	Sorghum	plastid	52.94	60.81
CDY48508	Canola	plastid	57.65	60.49
Bra037380.1-P	Field mustard	plastid	57.65	60.49
Zm00001d037323_P001	Maize	plastid	52.35	60.14
CDY07178	Canola	plastid	59.41	60.12
TraesCS6A01G292800.2	Wheat	plastid	54.71	59.24
GSMUA_Achr3P20270_001	Banana	plastid	58.24	58.58
TraesCS6D01G273900.1	Wheat	plastid	54.71	58.12
GSMUA_Achr10P...	Banana	plastid	59.41	58.05
TraesCS6B01G323200.2	Wheat	plastid	52.94	57.32
Zm00001d027456_P001	Maize	plastid	48.82	55.33
TraesCS7A01G206700.1	Wheat	plastid	51.18	55.06
TraesCS7D01G209600.1	Wheat	plastid	51.18	55.06
KXG30819	Sorghum	plastid	55.88	54.6
TraesCS7B01G114100.1	Wheat	plastid	50.59	54.43
Os06t0264800-01	Rice	plastid	49.41	53.85
GSMUA_Achr7P18720_001	Banana	plastid	59.41	43.35
Solyc03g007830.2.1	Tomato	plastid	42.35	40.68
HORVU6Hr1G073100.4	Barley	plastid	55.29	33.45
Solyc10g005050.2.1	Tomato	plastid	31.76	30.0
Solyc06g066620.2.1	Tomato	plastid	25.88	29.93
Solyc11g010480.1.1	Tomato	plastid	32.94	10.77

Protein Annotations

EnsemblPlants:Solyc01g095430.2.1	EnsemblPlantsGene:Solyc01g095430.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0009579
GO:GO:0016020	GO:GO:0016021	InterPro:CAAD_dom	InterPro:CURT1	ncoils:Coil	PANTHER:PTHR33222
PANTHER:PTHR33222:SF4	PFAM:PF14159	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276910F	UniProt:K4AZT2
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:86680204..86683496

Molecular Weight (calculated)

17988.8 Da

IEP (calculated)

9.373

GRAVY (calculated)

0.247

Length

170 amino acids

Sequence
(BLAST)

001: MAAAAAASTS MAATAVFASP FPLSSTTKAA PARCSALPYL PSRLSAIAFP SSLKIAEPKR SSLLQVKASS SEESGAVDTS ELLTDLKEKW DALDNKSTVI
101: VYGGGAIVAV WLSSIVVSAI NSVPLLPKIM ELVGLGYSGW FVYRYLLFKS SRKELAEDIE QLKKKIAGTE

Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)

001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE

Arabidopsis Description

CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.