Factsheet for Solyc11g010480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041783	Potato	plastid	84.62	57.44
VIT_00s0199g00150.t01	Wine grape	plastid	18.08	46.08
VIT_00s0199g00110.t01	Wine grape	plastid	18.08	46.08
KRH74509	Soybean	plastid	15.77	41.62
KRH69655	Soybean	endoplasmic reticulum	15.77	41.0
GSMUA_Achr5P17930_001	Banana	cytosol	8.46	38.94
Bra010636.1-P	Field mustard	plastid	13.85	37.7
CDX90383	Canola	plastid	14.04	37.24
AT4G38100.1	Thale cress	plastid	13.65	36.79
GSMUA_Achr6P04200_001	Banana	cytosol	9.62	36.5
CDY52513	Canola	plastid	13.85	35.47
Solyc01g095430.2.1	Tomato	plastid	10.77	32.94
Solyc10g011770.2.1	Tomato	plastid	10.58	32.54
Os09t0465800-01	Rice	plastid	11.15	32.04
TraesCS5D01G253600.1	Wheat	plastid	10.77	30.6
Zm00001d005926_P001	Maize	plastid	10.58	30.39
TraesCS5B01G244200.1	Wheat	mitochondrion, plastid	10.58	30.05
Solyc03g007830.2.1	Tomato	plastid	10.0	29.38
TraesCS5A01G247100.1	Wheat	plastid	10.19	28.96
EER99031	Sorghum	mitochondrion, plastid	10.0	27.23
Solyc10g005050.2.1	Tomato	plastid	8.65	25.0
GSMUA_Achr7P12860_001	Banana	plastid	11.15	24.37
Solyc06g066620.2.1	Tomato	plastid	6.73	23.81
HORVU0Hr1G013240.2	Barley	cytosol	8.27	20.38

Protein Annotations

EnsemblPlants:Solyc11g010480.1.1	EnsemblPlantsGene:Solyc11g010480.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0009579
GO:GO:0016020	GO:GO:0016021	InterPro:CAAD_dom	InterPro:CURT1	PANTHER:PTHR33222	PANTHER:PTHR33222:SF4
PFAM:PF14159	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769643	UniProt:K4D5K9	MapMan:35.1

Description

No Description!

Coordinates

chr11:+:3542067..3547598

Molecular Weight (calculated)

57697.6 Da

IEP (calculated)

3.953

GRAVY (calculated)

-0.805

Length

520 amino acids

Sequence
(BLAST)

001: MELCVPQTFS NLPNYRISNR AQLQWRPSLL LKKPSKSRFN SGSFYRKGSA VRTKAETEAY ELYVPPTVEE KDDESVRSKA ETEAYELYVP PPTVEEKDDG
101: AVRSKSEEEA YELYVPATVE EKDDGAVRSK SEEEAYELYV PTTVEEKDDG AVKNGAPVED SMTDKDTDAY ASLISEPPKV EEKDDGAVQN GAPIEDSSKD
201: KETDAYASLI YEPPKVEEKD DGAVQNEAPI EDSSKDKETD AYASLIYEPP KVEEKDDGAI QNGAPIEDSS KDKETDSSAD FIYEPPKVEE KDDGAVQAEA
301: PIEDSGNDKE TDAYAALIYE SPKVEEKDDG VIQDEAPIED TREDKETDSY ASLTYEPPTV EEKDDATIQN EAPIDYSSKD KETDAYVSLT YEPPKEDSAV
401: QVEAPIEDSA VQAEAPIEDS ALEFESQLSK FFDTLNIKYD PKDPSSIILF GAVALTALWL TTSIVGAIDS VPLVPKLMEL VGLGYALWFT ARYLLFKKNR
501: DEFAAKIEDL KQKTLGSRDD

Best Arabidopsis Sequence Match ( AT4G38100.1 )
(BLAST)

001: MELCTRSTTI ITHLPASFNG HGYLAGKSVD RISLPLQRNV ASLVLQSRTL RCSRKFPGET VTEETSTGVN EFGVEDRDGV VVAAEEKNSN SEAPQAEDEE
101: TQALEFLNDI KLDSDKTYSI LLYGSGAIVA LYLTSAIVSS LEAIPLFPKL MEVVGLGYTL WFTTRYLLFK RNREELKTKV SEIKKQVLGS DSE

Arabidopsis Description

CURT1DProtein CURVATURE THYLAKOID 1D, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDD3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.