Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20363867
plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc08g081730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01150.1 Solyc08g081730.2.1 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g095430.2.1 Tomato plastid 72.78 72.35
AT4G01150.1 Thale cress plastid 62.13 64.02
Os02t0731600-01 Rice cytosol 40.83 63.89
KRH47985 Soybean plastid 60.95 63.19
KRH06541 Soybean plastid 59.76 61.96
CDX74360 Canola plasma membrane, plastid 59.17 60.98
CDY07178 Canola plastid 60.35 60.71
Bra000947.1-P Field mustard plastid 58.58 60.37
EER89571 Sorghum plastid 52.66 60.14
Zm00001d037323_P001 Maize plastid 52.66 60.14
CDY48508 Canola plastid 57.4 59.88
Bra037380.1-P Field mustard plastid 57.4 59.88
CDY53863 Canola plastid 59.76 59.76
Bra008533.1-P Field mustard plastid 59.76 59.76
CDX91881 Canola plastid 57.99 59.76
CDY01956 Canola plastid 59.17 59.17
Zm00001d051785_P001 Maize plastid 53.85 57.96
Zm00001d027456_P001 Maize plastid 50.3 56.67
TraesCS7D01G209600.1 Wheat plastid 50.89 54.43
TraesCS7A01G206700.1 Wheat plastid 50.89 54.43
TraesCS6D01G273900.1 Wheat plastid 51.48 54.38
TraesCS6A01G292800.2 Wheat plastid 50.3 54.14
TraesCS7B01G114100.1 Wheat plastid 50.3 53.8
TraesCS6B01G323200.2 Wheat plastid 49.7 53.5
KXG30819 Sorghum plastid 54.44 52.87
GSMUA_Achr3P20270_001 Banana plastid 52.66 52.66
Os06t0264800-01 Rice plastid 47.34 51.28
GSMUA_Achr10P... Banana plastid 52.66 51.15
Solyc03g007830.2.1 Tomato plastid 43.2 41.24
GSMUA_Achr7P18720_001 Banana plastid 53.85 39.06
Solyc10g005050.2.1 Tomato plastid 36.09 33.89
HORVU6Hr1G073100.4 Barley plastid 52.66 31.67
Solyc06g066620.2.1 Tomato plastid 26.63 30.61
Solyc11g010480.1.1 Tomato plastid 32.54 10.58
Protein Annotations
EnsemblPlants:Solyc10g011770.2.1EnsemblPlantsGene:Solyc10g011770.2GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0009579
GO:GO:0016020GO:GO:0016021InterPro:CAAD_domInterPro:CURT1PANTHER:PTHR33222PANTHER:PTHR33222:SF4
PFAM:PF14159SEG:segTMHMM:TMhelixUniParc:UPI000276BFADUniProt:K4CYF5MapMan:35.1
Description
No Description!
Coordinates
chr10:+:4007667..4016776
Molecular Weight (calculated)
18128.7 Da
IEP (calculated)
7.342
GRAVY (calculated)
0.215
Length
169 amino acids
Sequence
(BLAST)
001: MASIAAASTS MASTAVFTTH LSLCSTAKAA SFCCSALPYL PPRVSASAIS TSFKFSESKR SSLHQVKASS SEETSVDTSE FITELKEKWD AVEDKTTVLL
101: YGGGAIVAVW ISSILVGAIN SVPLLPKVLE LVGLGYTGWF VYRYLLFKSS RKELAEDIEE LKKKVAGSE
Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)
001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE
Arabidopsis Description
CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.