Factsheet for Solyc10g005050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029398	Potato	plastid	97.22	97.22
VIT_15s0048g02500.t01	Wine grape	plastid	68.33	71.93
KRH47772	Soybean	plastid	61.11	65.48
KRH06344	Soybean	plastid	60.0	64.29
CDY27519	Canola	mitochondrion	45.56	64.06
AT2G46820.1	Thale cress	plastid	59.44	61.49
Bra040482.1-P	Field mustard	plastid	56.67	61.08
CDY48012	Canola	plastid	56.67	61.08
CDX80050	Canola	plastid	61.67	60.66
Bra004504.1-P	Field mustard	plastid	61.11	60.11
CDY41562	Canola	plastid	61.11	60.11
CDY27520	Canola	plastid	50.0	57.32
GSMUA_Achr8P12340_001	Banana	plastid	55.0	56.57
GSMUA_AchrUn_...	Banana	plastid	49.44	52.98
EER97176	Sorghum	mitochondrion, plastid	42.22	51.7
Os07t0469100-01	Rice	plastid	42.22	50.67
KRH68969	Soybean	cytosol	63.33	50.67
Zm00001d021370_P001	Maize	plastid	43.33	50.65
TraesCS2D01G238700.1	Wheat	plastid	37.78	46.9
KRG97255	Soybean	plastid	52.22	46.77
TraesCS1B01G214700.1	Wheat	plastid	42.78	45.83
KXG39014	Sorghum	plastid	43.89	45.4
Os10t0536500-01	Rice	plasma membrane	43.33	45.35
TraesCS1A01G200000.2	Wheat	plastid	42.78	45.29
TraesCS1D01G203500.2	Wheat	plastid	42.78	45.29
HORVU1Hr1G051700.6	Barley	plastid	42.22	43.18
Zm00001d029745_P004	Maize	plastid	41.11	38.95
Solyc10g011770.2.1	Tomato	plastid	33.89	36.09
TraesCS2B01G256300.2	Wheat	mitochondrion, plastid	33.33	34.88
Solyc06g066620.2.1	Tomato	plastid	28.33	34.69
TraesCS2A01G235000.2	Wheat	mitochondrion, plastid	31.67	34.34
Solyc01g095430.2.1	Tomato	plastid	30.0	31.76
Solyc03g007830.2.1	Tomato	plastid	26.11	26.55
Solyc11g010480.1.1	Tomato	plastid	25.0	8.65

Protein Annotations

MapMan:35.1	InterPro:CAAD_dom	InterPro:CURT1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009719	GO:GO:0009737	GO:GO:0009773	GO:GO:0009941
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0019904	GO:GO:0030093
UniProt:K4CX39	PFAM:PF14159	PANTHER:PTHR33222	PANTHER:PTHR33222:SF9	EnsemblPlantsGene:Solyc10g005050.2	EnsemblPlants:Solyc10g005050.2.1
TMHMM:TMhelix	UniParc:UPI000276C548	SEG:seg	:	:	:

Description

Protein CURVATURE THYLAKOID 1B, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G46820) UniProtKB/Swiss-Prot;Acc:Q8LCA1]

Coordinates

chr10:+:50241..52495

Molecular Weight (calculated)

19082.9 Da

IEP (calculated)

8.676

GRAVY (calculated)

0.139

Length

180 amino acids

Sequence
(BLAST)

001: MASTTTPSLS LSSSSTLVDG KTTRQSAAVA SSQCVTLPTL PPRPAVQSRA ARTTAYCRKI ARNVAAMATS TGEVATADAT AETATTELPS ELVQKIQEVW
101: DKVDDKYAVS SLGVAAFILL WSSTGVISAI DRLPLIPGVL ELVGIGYTGW FAYKNLIFKP DREALIAKIK ELYKDILGSS

Best Arabidopsis Sequence Match ( AT2G46820.1 )
(BLAST)

001: MASLSVSSSS TIIDSRAPPS RLASASASSP SCISLPTLPI QSHTRAAKAT AYCRKIVRNV VTRATTEVGE APATTTEAET TELPEIVKTA QEAWEKVDDK
101: YAIGSLAFAG VVALWGSAGM ISAIDRLPLV PGVLELVGIG YTGWFTYKNL VFKPDREALF EKVKSTYKDI LGSS

Arabidopsis Description

CURT1BProtein CURVATURE THYLAKOID 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.