Factsheet for Zm00001d021370_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
extracellular 1

Predictors

GFP

MS/MS

Papers

plastid: 22833285

msms PMID: 22833285 doi

R Fristedt, W Wasilewska, E Romanowska, AV Vener

Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97176	Sorghum	mitochondrion, plastid	89.61	93.88
TraesCS2D01G238700.1	Wheat	plastid	66.88	71.03
Os07t0469100-01	Rice	plastid	66.23	68.0
TraesCS2A01G235000.2	Wheat	mitochondrion, plastid	57.79	53.61
CDY27519	Canola	mitochondrion	44.16	53.12
TraesCS2B01G256300.2	Wheat	mitochondrion, plastid	59.09	52.91
VIT_15s0048g02500.t01	Wine grape	plastid	51.95	46.78
AT2G46820.1	Thale cress	plastid	51.95	45.98
KRH06344	Soybean	plastid	48.05	44.05
Bra040482.1-P	Field mustard	plastid	47.4	43.71
CDY48012	Canola	plastid	47.4	43.71
KRH47772	Soybean	plastid	47.4	43.45
Solyc10g005050.2.1	Tomato	plastid	50.65	43.33
PGSC0003DMT400029398	Potato	plastid	50.65	43.33
GSMUA_AchrUn_...	Banana	plastid	46.1	42.26
CDY41562	Canola	plastid	50.0	42.08
GSMUA_Achr8P12340_001	Banana	plastid	47.4	41.71
Bra004504.1-P	Field mustard	plastid	49.35	41.53
CDX80050	Canola	plastid	49.35	41.53
CDY27520	Canola	plastid	41.56	40.76
KRH68969	Soybean	cytosol	47.4	32.44
Zm00001d037323_P001	Maize	plastid	31.17	32.43
Zm00001d029745_P004	Maize	plastid	38.96	31.58
Zm00001d027456_P001	Maize	plastid	30.52	31.33
Zm00001d051785_P001	Maize	plastid	30.52	29.94
Zm00001d012689_P001	Maize	plastid	31.17	28.92
KRG97255	Soybean	plastid	37.01	28.36
Zm00001d032232_P007	Maize	mitochondrion	26.62	25.95
Zm00001d005926_P001	Maize	plastid	22.73	19.34
Zm00001d052184_P001	Maize	plastid	22.73	17.68
Zm00001d018130_P001	Maize	plastid	20.13	15.74

Protein Annotations

MapMan:35.1	UniProt:A0A1D6IAH8	InterPro:CAAD_dom	InterPro:CURT1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	ProteinID:ONM56978.1	PFAM:PF14159
PANTHER:PTHR33222	PANTHER:PTHR33222:SF9	TMHMM:TMhelix	UniParc:UPI000845369F	EnsemblPlantsGene:Zm00001d021370	EnsemblPlants:Zm00001d021370_P001
EnsemblPlants:Zm00001d021370_T001	SEG:seg	:	:	:	:

Description

Protein CURVATURE THYLAKOID 1B chloroplastic

Coordinates

chr7:+:150111805..150113628

Molecular Weight (calculated)

16077.6 Da

IEP (calculated)

8.471

GRAVY (calculated)

0.352

Length

154 amino acids

Sequence
(BLAST)

001: MATACHLAAP LGLAPLPRGC ASAGVVAVVR CGSKIPRGVA VRATSGGEGA TEEVPEIVKA AQDAWDKVED KYAVATIGVA AIVALWTVVG AIKDSLFLRA
101: QAIDKLPLLP GVLEIVGIGY TGWFTYRNLV FQPDREALIG KIKSTYKEIT GSSN

Best Arabidopsis Sequence Match ( AT2G46820.1 )
(BLAST)

001: MASLSVSSSS TIIDSRAPPS RLASASASSP SCISLPTLPI QSHTRAAKAT AYCRKIVRNV VTRATTEVGE APATTTEAET TELPEIVKTA QEAWEKVDDK
101: YAIGSLAFAG VVALWGSAGM ISAIDRLPLV PGVLELVGIG YTGWFTYKNL VFKPDREALF EKVKSTYKDI LGSS

Arabidopsis Description

CURT1BProtein CURVATURE THYLAKOID 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.