CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040482.1-P	Field mustard	plastid	100.0	100.0
CDY27519	Canola	mitochondrion	72.46	94.53
CDY27520	Canola	plastid	86.23	91.72
AT2G46820.1	Thale cress	plastid	79.04	75.86
CDX80050	Canola	plastid	76.05	69.4
CDY41562	Canola	plastid	74.25	67.76
VIT_15s0048g02500.t01	Wine grape	plastid	62.28	60.82
KRH47772	Soybean	plastid	61.08	60.71
KRH06344	Soybean	plastid	61.08	60.71
Solyc10g005050.2.1	Tomato	plastid	61.08	56.67
PGSC0003DMT400029398	Potato	plastid	60.48	56.11
EER97176	Sorghum	mitochondrion, plastid	43.71	49.66
Os07t0469100-01	Rice	plastid	43.71	48.67
TraesCS2D01G238700.1	Wheat	plastid	41.32	47.59
GSMUA_Achr8P12340_001	Banana	plastid	49.7	47.43
Zm00001d021370_P001	Maize	plastid	43.71	47.4
GSMUA_AchrUn_...	Banana	plastid	46.11	45.83
KRH68969	Soybean	cytosol	59.88	44.44
TraesCS1B01G214700.1	Wheat	plastid	42.52	42.26
KRG97255	Soybean	plastid	50.3	41.79
TraesCS1D01G203500.2	Wheat	plastid	42.52	41.76
TraesCS1A01G200000.2	Wheat	plastid	41.92	41.18
HORVU1Hr1G051700.6	Barley	plastid	41.92	39.77
KXG39014	Sorghum	plastid	41.32	39.66
Os10t0536500-01	Rice	plasma membrane	38.32	37.21
CDY67261	Canola	plastid	31.74	36.55
TraesCS2B01G256300.2	Wheat	mitochondrion, plastid	37.13	36.05
CDY52984	Canola	plastid	31.14	35.86
TraesCS2A01G235000.2	Wheat	mitochondrion, plastid	35.33	35.54
Zm00001d029745_P004	Maize	plastid	37.13	32.63
CDY07178	Canola	plastid	28.74	28.57
CDY48508	Canola	plastid	26.95	27.78
CDX74360	Canola	plasma membrane, plastid	26.35	26.83
CDY53863	Canola	plastid	26.95	26.63
CDY01956	Canola	plastid	26.95	26.63
CDX91881	Canola	plastid	25.75	26.22
CDX90383	Canola	plastid	24.55	20.92
CDY52513	Canola	plastid	23.95	19.7

Protein Annotations

MapMan:35.1	GO:A0A078ID80	UniProt:A0A078ID80	InterPro:CAAD_dom	EnsemblPlants:CDY48012	ProteinID:CDY48012
ProteinID:CDY48012.1	InterPro:CURT1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0009579
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00088658001	PFAM:PF14159	PANTHER:PTHR33222	PANTHER:PTHR33222:SF9
TMHMM:TMhelix	UniParc:UPI0002544817	SEG:seg	:	:	:

Description

BnaA04g26780DBnaA04g26780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID80]

Coordinates

chrLK032749:-:64850..67156

Molecular Weight (calculated)

18161.9 Da

IEP (calculated)

8.178

GRAVY (calculated)

0.030

Length

167 amino acids

Sequence
(BLAST)

001: MASLSISSSS TIINSRASPP GQASFSSPSC ISLPMLPPKP LQSTAYCRKI ARRNVPTRAT EVEAPVTAEA ETTELPEIVK TAQEAWEKVE DKYAIGSLAF
101: AALLALWGST GLISAIDRLP LFPGVFELVG IGYTGWFVYK NMIFKPDREV LFQKVKDTYR DILGSSS

Best Arabidopsis Sequence Match ( AT2G46820.1 )
(BLAST)

001: MASLSVSSSS TIIDSRAPPS RLASASASSP SCISLPTLPI QSHTRAAKAT AYCRKIVRNV VTRATTEVGE APATTTEAET TELPEIVKTA QEAWEKVDDK
101: YAIGSLAFAG VVALWGSAGM ISAIDRLPLV PGVLELVGIG YTGWFTYKNL VFKPDREALF EKVKSTYKDI LGSS

Arabidopsis Description

CURT1BProtein CURVATURE THYLAKOID 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.