Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra010636.1-P Field mustard plastid 94.39 96.86
CDY52513 Canola plastid 95.41 92.12
AT4G38100.1 Thale cress plastid 71.94 73.06
GSMUA_Achr5P17930_001 Banana cytosol 22.96 39.82
VIT_00s0199g00150.t01 Wine grape plastid 40.82 39.22
VIT_00s0199g00110.t01 Wine grape plastid 40.82 39.22
KRH74509 Soybean plastid 38.27 38.07
KRH69655 Soybean endoplasmic reticulum 37.76 37.0
TraesCS5D01G253600.1 Wheat plastid 32.65 34.97
TraesCS5A01G247100.1 Wheat plastid 32.65 34.97
TraesCS5B01G244200.1 Wheat mitochondrion, plastid 32.14 34.43
CDX74360 Canola plasma membrane, plastid 28.57 34.15
Zm00001d005926_P001 Maize plastid 31.12 33.7
EER99031 Sorghum mitochondrion, plastid 32.65 33.51
CDY48508 Canola plastid 27.55 33.33
CDY07178 Canola plastid 28.57 33.33
CDX91881 Canola plastid 27.55 32.93
Os09t0465800-01 Rice plastid 30.1 32.6
CDY53863 Canola plastid 27.55 31.95
CDY01956 Canola plastid 27.04 31.36
GSMUA_Achr6P04200_001 Banana cytosol 19.9 28.47
CDY27519 Canola mitochondrion 17.35 26.56
HORVU0Hr1G013240.2 Barley cytosol 26.53 24.64
CDY48012 Canola plastid 20.92 24.55
GSMUA_Achr7P12860_001 Banana plastid 28.57 23.53
CDY27520 Canola plastid 17.35 21.66
CDY52984 Canola plastid 14.8 20.0
CDY67261 Canola plastid 14.29 19.31
CDX80050 Canola plastid 17.86 19.13
CDY41562 Canola plastid 17.86 19.13
Solyc11g010480.1.1 Tomato plastid 37.24 14.04
PGSC0003DMT400041783 Potato plastid 37.24 9.53
Protein Annotations
EnsemblPlants:CDX90383EnsemblPlantsGene:GSBRNA2T00150982001GO:A0A078DT44GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0009579InterPro:CAAD_domInterPro:CURT1PANTHER:PTHR33222PANTHER:PTHR33222:SF2PFAM:PF14159
ProteinID:CDX90383ProteinID:CDX90383.1SEG:segTMHMM:TMhelixUniParc:UPI0004EEAEC2MapMan:35.1
Description
BnaA08g16010D
Coordinates
chrLK031862:+:1490433..1491773
Molecular Weight (calculated)
21744.9 Da
IEP (calculated)
4.757
GRAVY (calculated)
-0.162
Length
196 amino acids
Sequence
(BLAST)
001: MELSTVTTIT HLPPTTSRHV YLTGNTAPVS RISLPLQGNV PSLCLQSHTL RCARKFPGET VSEDTSTGVN EFVLEKPEVV ADKEDNFTKK NFTSEVQAED
101: EQTQASLEFF NDIKLDSDNT YSIVLYGFGG ILAIYLTSAI VGSLESVPLL PKLMEVVGLG YTLWFTTRYL LFKSNREELK TKISEIKKQV LGSDSD
Best Arabidopsis Sequence Match ( AT4G38100.1 )
(BLAST)
001: MELCTRSTTI ITHLPASFNG HGYLAGKSVD RISLPLQRNV ASLVLQSRTL RCSRKFPGET VTEETSTGVN EFGVEDRDGV VVAAEEKNSN SEAPQAEDEE
101: TQALEFLNDI KLDSDKTYSI LLYGSGAIVA LYLTSAIVSS LEAIPLFPKL MEVVGLGYTL WFTTRYLLFK RNREELKTKV SEIKKQVLGS DSE
Arabidopsis Description
CURT1DProtein CURVATURE THYLAKOID 1D, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDD3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.