Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74509 | Soybean | plastid | 86.5 | 87.82 |
| VIT_00s0199g00150.t01 | Wine grape | plastid | 45.0 | 44.12 |
| VIT_00s0199g00110.t01 | Wine grape | plastid | 44.5 | 43.63 |
| GSMUA_Achr5P17930_001 | Banana | cytosol | 22.5 | 39.82 |
| AT4G38100.1 | Thale cress | plastid | 38.0 | 39.38 |
| Bra010636.1-P | Field mustard | plastid | 37.0 | 38.74 |
| GSMUA_Achr6P04200_001 | Banana | cytosol | 26.0 | 37.96 |
| CDX90383 | Canola | plastid | 37.0 | 37.76 |
| CDY52513 | Canola | plastid | 38.0 | 37.44 |
| Zm00001d005926_P001 | Maize | plastid | 29.5 | 32.6 |
| KRH06541 | Soybean | plastid | 26.5 | 32.52 |
| KRH47985 | Soybean | plastid | 26.0 | 31.9 |
| Os09t0465800-01 | Rice | plastid | 28.0 | 30.94 |
| TraesCS5A01G247100.1 | Wheat | plastid | 28.0 | 30.6 |
| TraesCS5B01G244200.1 | Wheat | mitochondrion, plastid | 28.0 | 30.6 |
| TraesCS5D01G253600.1 | Wheat | plastid | 28.0 | 30.6 |
| EER99031 | Sorghum | mitochondrion, plastid | 28.0 | 29.32 |
| KRH47274 | Soybean | plastid | 20.5 | 28.28 |
| GSMUA_Achr7P12860_001 | Banana | plastid | 33.0 | 27.73 |
| HORVU0Hr1G013240.2 | Barley | cytosol | 25.5 | 24.17 |
| KRH47772 | Soybean | plastid | 20.0 | 23.81 |
| KRH06344 | Soybean | plastid | 20.0 | 23.81 |
| KRH44347 | Soybean | plastid | 15.5 | 18.34 |
| KRH68969 | Soybean | cytosol | 20.0 | 17.78 |
| KRG97255 | Soybean | plastid | 16.5 | 16.42 |
| Solyc11g010480.1.1 | Tomato | plastid | 41.0 | 15.77 |
| PGSC0003DMT400041783 | Potato | plastid | 40.5 | 10.57 |
Protein Annotations
| EMBL:ACUP02000727 | EMBL:BT089834 | EnsemblPlants:KRH69655 | EnsemblPlantsGene:GLYMA_02G040600 | EntrezGene:100305966 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0016021 | InterPro:CAAD_dom |
| InterPro:CURT1 | PANTHER:PTHR33222 | PANTHER:PTHR33222:SF2 | PFAM:PF14159 | ProteinID:KRH69655 | ProteinID:KRH69655.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0001B152BB | UniProt:C6SXE0 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr2:+:3819970..3821966
Molecular Weight (calculated)
21969.9 Da
IEP (calculated)
4.369
GRAVY (calculated)
-0.262
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCTVQPIT LSKLPNASSF LPKPKPSLPQ SYTPSAAHLS RSVCLRNLSP KATSSEEERS SGGSQFFNEK RDGVIILEDV KEDNNKNEFD KTVIEDTKQD
101: LFDDDGQGLS FDLLDKLNFD TDDTGSIVVY GGGALVALWL TSAVIGAIDS IPLFPKLLEV VGLAYTVWFT SRYLLFKQNR DELGAKIEEL KGQIFGSEDN
101: LFDDDGQGLS FDLLDKLNFD TDDTGSIVVY GGGALVALWL TSAVIGAIDS IPLFPKLLEV VGLAYTVWFT SRYLLFKQNR DELGAKIEEL KGQIFGSEDN
001: MELCTRSTTI ITHLPASFNG HGYLAGKSVD RISLPLQRNV ASLVLQSRTL RCSRKFPGET VTEETSTGVN EFGVEDRDGV VVAAEEKNSN SEAPQAEDEE
101: TQALEFLNDI KLDSDKTYSI LLYGSGAIVA LYLTSAIVSS LEAIPLFPKL MEVVGLGYTL WFTTRYLLFK RNREELKTKV SEIKKQVLGS DSE
101: TQALEFLNDI KLDSDKTYSI LLYGSGAIVA LYLTSAIVSS LEAIPLFPKL MEVVGLGYTL WFTTRYLLFK RNREELKTKV SEIKKQVLGS DSE
Arabidopsis Description
CURT1DProtein CURVATURE THYLAKOID 1D, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDD3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.