CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90383	Canola	plastid	92.12	95.41
Bra010636.1-P	Field mustard	plastid	89.16	94.76
AT4G38100.1	Thale cress	plastid	69.95	73.58
GSMUA_Achr5P17930_001	Banana	cytosol	22.17	39.82
VIT_00s0199g00150.t01	Wine grape	plastid	39.9	39.71
VIT_00s0199g00110.t01	Wine grape	plastid	39.9	39.71
KRH74509	Soybean	plastid	37.44	38.58
KRH69655	Soybean	endoplasmic reticulum	37.44	38.0
TraesCS5D01G253600.1	Wheat	plastid	30.54	33.88
TraesCS5A01G247100.1	Wheat	plastid	30.54	33.88
Os09t0465800-01	Rice	plastid	30.05	33.7
EER99031	Sorghum	mitochondrion, plastid	31.53	33.51
TraesCS5B01G244200.1	Wheat	mitochondrion, plastid	30.05	33.33
CDX74360	Canola	plasma membrane, plastid	26.6	32.93
Zm00001d005926_P001	Maize	plastid	29.06	32.6
CDY07178	Canola	plastid	26.6	32.14
CDY48508	Canola	plastid	25.62	32.1
CDX91881	Canola	plastid	25.62	31.71
CDY53863	Canola	plastid	25.62	30.77
CDY01956	Canola	plastid	25.12	30.18
GSMUA_Achr6P04200_001	Banana	cytosol	19.21	28.47
CDY27519	Canola	mitochondrion	16.26	25.78
HORVU0Hr1G013240.2	Barley	cytosol	25.62	24.64
CDY48012	Canola	plastid	19.7	23.95
GSMUA_Achr7P12860_001	Banana	plastid	27.09	23.11
CDY27520	Canola	plastid	16.26	21.02
CDY52984	Canola	plastid	13.79	19.31
CDY41562	Canola	plastid	17.24	19.13
CDX80050	Canola	plastid	17.24	19.13
CDY67261	Canola	plastid	13.3	18.62
Solyc11g010480.1.1	Tomato	plastid	35.47	13.85
PGSC0003DMT400041783	Potato	plastid	34.98	9.27

Protein Annotations

EnsemblPlants:CDY52513	EnsemblPlantsGene:GSBRNA2T00007197001	GO:A0A078IU36	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	InterPro:CAAD_dom	InterPro:CURT1	PANTHER:PTHR33222
PANTHER:PTHR33222:SF2	PFAM:PF14159	ProteinID:CDY52513	ProteinID:CDY52513.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDF66C	UniProt:A0A078IU36	MapMan:35.1	:	:	:

Description

BnaC03g61060DBnaC03g61060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU36]

Coordinates

chrLK033098:+:38145..39479

Molecular Weight (calculated)

22388.5 Da

IEP (calculated)

4.574

GRAVY (calculated)

-0.143

Length

203 amino acids

Sequence
(BLAST)

001: MELSTVTTIT HLPLTTSRHV YLTGNTAPVS RISLPLQGNV PSLCLQSHTL RCTRKFPGET VSEDTSTGVN EFGLVKPEVV ADKEDNFTSD VVADKEKNFT
101: SEAQAEDEQT QASLEFLNDI KLDSDNTYSI VLYGFGSVLA IYLTSAIVGS LESVPLLPKL MEVVGLGYTL WFTTRYLLFK SNREELKTKI SEIKKQVLGS
201: DSD

Best Arabidopsis Sequence Match ( AT4G38100.1 )
(BLAST)

001: MELCTRSTTI ITHLPASFNG HGYLAGKSVD RISLPLQRNV ASLVLQSRTL RCSRKFPGET VTEETSTGVN EFGVEDRDGV VVAAEEKNSN SEAPQAEDEE
101: TQALEFLNDI KLDSDKTYSI LLYGSGAIVA LYLTSAIVSS LEAIPLFPKL MEVVGLGYTL WFTTRYLLFK RNREELKTKV SEIKKQVLGS DSE

Arabidopsis Description

CURT1DProtein CURVATURE THYLAKOID 1D, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDD3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.