Factsheet for Zm00001d027456_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008982_P001
Zm00001d012776_P001
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d037453_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d043551_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01150.1	Zm00001d008982_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d012776_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d016041_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d020229_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d020729_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d037453_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d038768_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d039316_P001	AT5G41600.1	21798944
AT4G01150.1	Zm00001d043551_P003	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037323_P001	Maize	plastid	89.33	90.54
EER89571	Sorghum	plastid	88.67	89.86
Os06t0264800-01	Rice	plastid	80.67	77.56
TraesCS7D01G209600.1	Wheat	plastid	80.67	76.58
TraesCS7B01G114100.1	Wheat	plastid	80.0	75.95
TraesCS7A01G206700.1	Wheat	plastid	80.0	75.95
Zm00001d051785_P001	Maize	plastid	78.0	74.52
GSMUA_Achr10P...	Banana	plastid	66.0	56.9
KRH47985	Soybean	plastid	58.0	53.37
AT4G01150.1	Thale cress	plastid	58.0	53.05
KRH06541	Soybean	plastid	57.33	52.76
GSMUA_Achr3P20270_001	Banana	plastid	58.67	52.07
CDX74360	Canola	plasma membrane, plastid	56.67	51.83
PGSC0003DMT400000589	Potato	plastid	57.33	51.5
CDY48508	Canola	plastid	54.67	50.62
Bra037380.1-P	Field mustard	plastid	54.67	50.62
Bra000947.1-P	Field mustard	plastid	55.33	50.61
Solyc10g011770.2.1	Tomato	plastid	56.67	50.3
VIT_15s0046g01470.t01	Wine grape	plastid	55.33	50.0
CDX91881	Canola	plastid	54.67	50.0
VIT_16s0050g02240.t01	Wine grape	plastid	53.33	49.69
CDY53863	Canola	plastid	55.33	49.11
Bra008533.1-P	Field mustard	plastid	55.33	49.11
Solyc01g095430.2.1	Tomato	plastid	55.33	48.82
CDY07178	Canola	plastid	54.67	48.81
CDY01956	Canola	plastid	54.67	48.52
Zm00001d032232_P007	Maize	mitochondrion	42.0	39.87
GSMUA_Achr7P18720_001	Banana	plastid	60.67	39.06
Zm00001d021370_P001	Maize	plastid	31.33	30.52
Zm00001d018130_P001	Maize	plastid	33.33	25.38
Zm00001d005926_P001	Maize	plastid	28.67	23.76
Zm00001d052184_P001	Maize	plastid	30.67	23.23
Zm00001d012689_P001	Maize	plastid	24.67	22.29
Zm00001d029745_P004	Maize	plastid	25.33	20.0

Protein Annotations

EMBL:BT040437	EMBL:BT041148	EMBL:EU952983	EnsemblPlants:Zm00001d027456_P001	EnsemblPlants:Zm00001d027456_T001	EnsemblPlantsGene:Zm00001d027456
EntrezGene:100273445	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0009579	GO:GO:0016020
GO:GO:0016021	InterPro:CAAD_dom	InterPro:CURT1	PANTHER:PTHR33222	PANTHER:PTHR33222:SF4	PFAM:PF14159
ProteinID:ONL93199.1	TMHMM:TMhelix	UniParc:UPI00017B77E3	UniProt:B4FTJ9	MapMan:35.1	:

Description

PBA1 homolog1

Coordinates

chr1:-:5661737..5663089

Molecular Weight (calculated)

16242.8 Da

IEP (calculated)

9.012

GRAVY (calculated)

0.179

Length

150 amino acids

Sequence
(BLAST)

001: MAATAYSVAL LGGARLPAAF LPRRSSVCHH QLRLQDAPRL ISLHRARAAS EDTSASGGDE LIEDLKAKWD AVEDKPTVLL YGGGAVVALW LTSVVVGAIN
101: AVPLLPKILE LVGLGYTGWF VYRYLLFKQS RKELVDDIET LKKKIAGTAE

Best Arabidopsis Sequence Match ( AT4G01150.1 )
(BLAST)

001: MAISVAASSS MAVMVPRVPA VSTRCSAVPY LPPRSFGRSS FTVPLKLVSG NGLQKVELLK TRASSEETSS IDTNELITDL KEKWDGLENK STVLIYGGGA
101: IVAVWLSSIV VGAINSVPLL PKVMELVGLG YTGWFVYRYL LFKSSRKELA EDIESLKKKI AGSE

Arabidopsis Description

CURT1AProtein CURVATURE THYLAKOID 1A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04616]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.