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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004543_P001
Zm00001d007067_P003
Zm00001d008982_P001
Zm00001d010538_P005
Zm00001d010824_P001
Zm00001d012017_P002
Zm00001d012393_P004
Zm00001d012776_P001
Zm00001d013600_P001
Zm00001d013839_P001
Zm00001d015005_P002
Zm00001d015006_P004
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020624_P002
Zm00001d020729_P001
Zm00001d024925_P001
Zm00001d024933_P003
Zm00001d029226_P001
Zm00001d032442_P002
Zm00001d034638_P001
Zm00001d037453_P001
Zm00001d037747_P001
Zm00001d038380_P001
Zm00001d038768_P001
Zm00001d039182_P001
Zm00001d039316_P001
Zm00001d039455_P002
Zm00001d040209_P001
Zm00001d040435_P003
Zm00001d040734_P001
Zm00001d041267_P001
Zm00001d042329_P001
Zm00001d043551_P003
Zm00001d044089_P002
Zm00001d044412_P001
Zm00001d047446_P002
Zm00001d053686_P001
Zm00001d054017_P003

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Zm00001d010824_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d040734_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT4G11220.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT4G11220.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d037747_P001 AT1G55190.1 21798944
AT5G41600.1 Zm00001d039455_P002 AT1G55190.1 21798944
AT5G41600.1 Zm00001d040435_P003 AT1G77350.1 21798944
AT5G41600.1 Zm00001d015005_P002 AT2G03120.1 21798944
AT5G41600.1 Zm00001d015006_P004 AT2G03120.1 21798944
AT5G41600.1 Zm00001d054017_P003 AT2G03120.1 21798944
AT5G41600.1 Zm00001d013600_P001 AT2G39960.1 21798944
AT5G41600.1 Zm00001d020624_P002 AT2G39960.1 21798944
AT5G41600.1 Zm00001d024925_P001 AT2G46890.1 21798944
AT5G41600.1 Zm00001d039182_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044089_P002 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044412_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d004543_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d007067_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d024933_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d029226_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d047446_P002 AT3G07950.1 21798944
AT5G41600.1 Zm00001d012017_P002 AT3G27080.1 21798944
AT5G41600.1 Zm00001d040209_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d042329_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d010538_P005 AT3G46060.1 21798944
AT5G41600.1 Zm00001d034638_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d038380_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT5G41600.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d008982_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d012776_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d016041_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020229_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020729_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d037453_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d038768_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d039316_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d043551_P003 AT5G41600.1 21798944
AT5G41600.1 Zm00001d013839_P001 AT5G53560.1 21798944
AT5G41600.1 Zm00001d032442_P002 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0226300-01 Rice plasma membrane 59.14 92.7
KXG31516 Sorghum cytosol, nucleus, plasma membrane 93.91 92.25
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 92.83 84.64
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 81.72 79.72
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 81.0 79.02
HORVU3Hr1G030760.2 Barley mitochondrion 81.36 72.29
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 81.36 70.5
Zm00001d043551_P003 Maize plasma membrane 63.44 68.87
KRH41254 Soybean cytosol, nucleus, plasma membrane 61.65 67.72
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 61.65 67.45
KRH59988 Soybean mitochondrion 61.29 67.32
Zm00001d012776_P001 Maize extracellular 60.93 67.19
Zm00001d038768_P001 Maize extracellular, mitochondrion 60.22 66.14
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 58.42 64.68
Solyc01g095200.2.1 Tomato plastid 60.57 64.26
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 60.57 63.77
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 57.71 63.14
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 56.63 62.95
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 56.27 62.8
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 56.27 62.55
CDY38194 Canola cytosol, nucleus, plasma membrane 55.91 62.4
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 56.99 62.35
Solyc03g007740.2.1 Tomato nucleus 56.99 62.35
KRH40357 Soybean endoplasmic reticulum 57.35 62.26
Zm00001d020729_P001 Maize plasma membrane 21.15 62.11
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 55.56 61.75
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 55.2 61.6
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 58.06 61.6
KRH00872 Soybean endoplasmic reticulum 56.99 61.39
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 55.56 61.26
CDY52012 Canola cytosol, peroxisome, plasma membrane 55.56 61.02
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 58.78 60.74
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 54.84 60.24
CDY53913 Canola cytosol, peroxisome, plasma membrane 54.84 60.24
KRH06560 Soybean endoplasmic reticulum 55.2 60.16
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 54.48 60.08
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 58.06 60.0
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 55.2 59.92
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 54.12 59.68
KRG99174 Soybean endoplasmic reticulum, plasma membrane 18.28 58.62
CDX79993 Canola cytosol, peroxisome, plasma membrane 52.33 58.17
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 52.33 58.17
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 55.91 57.56
CDY42012 Canola cytosol, peroxisome, plasma membrane 51.61 57.37
Zm00001d020229_P001 Maize plasma membrane 31.18 57.24
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 51.97 56.86
Bra019285.1-P Field mustard cytosol 54.48 56.72
CDY10954 Canola cytosol 54.84 56.67
KRH35223 Soybean cytosol, nucleus, plasma membrane 50.54 56.4
CDY24806 Canola cytosol 55.2 56.2
CDX90792 Canola cytosol, peroxisome, plasma membrane 53.76 56.18
AT4G11220.1 Thale cress nucleus 54.48 56.09
AT4G23630.2 Thale cress nucleus 55.2 56.0
Bra000739.1-P Field mustard cytosol 53.41 55.81
Bra010539.1-P Field mustard cytosol 53.76 55.76
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 50.54 55.51
CDY41666 Canola cytosol 54.84 55.43
CDY57657 Canola cytosol, nucleus, plasma membrane 54.12 54.91
CDY44123 Canola cytosol, nucleus, plasma membrane 54.12 54.71
Bra013717.1-P Field mustard nucleus 54.12 54.71
Zm00001d016041_P001 Maize extracellular 44.8 54.35
VIT_02s0025g00590.t01 Wine grape mitochondrion 11.11 51.67
KRH48008 Soybean cytosol, peroxisome, plasma membrane 58.06 51.59
CDY13240 Canola cytosol, peroxisome, plasma membrane 29.75 51.55
Zm00001d037848_P008 Maize endoplasmic reticulum, nucleus, peroxisome 45.52 50.4
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 44.8 47.89
AT4G01230.2 Thale cress cytosol 41.58 47.54
Bra037369.1-P Field mustard cytosol 40.86 46.91
CDY07184 Canola cytosol, peroxisome, plasma membrane 40.86 46.91
CDY48510 Canola cytosol 40.86 46.91
CDY05135 Canola mitochondrion 51.61 46.01
Zm00001d034313_P001 Maize cytosol, nucleus, plasma membrane 38.71 43.55
CDY62522 Canola cytosol 11.83 41.25
KRG91601 Soybean mitochondrion 49.1 40.29
Zm00001d038910_P001 Maize plasma membrane 32.62 40.09
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 30.47 38.46
Zm00001d018781_P001 Maize extracellular, mitochondrion 33.33 38.27
Zm00001d008590_P001 Maize plastid 17.2 36.09
Bra035242.1-P Field mustard cytosol 25.45 35.5
CDX86802 Canola cytosol, nucleus, peroxisome 30.82 35.1
Zm00001d001901_P002 Maize plasma membrane 24.01 33.84
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 24.01 33.84
Zm00001d047517_P001 Maize peroxisome 27.6 33.77
Zm00001d042846_P001 Maize plasma membrane 25.09 33.33
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 20.43 31.67
CDX89122 Canola extracellular, mitochondrion 17.2 31.37
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 20.43 24.36
Protein Annotations
EntrezGene:101027215MapMan:13.7.2.1ProteinID:AQK91112.1GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
UniProt:K7URG5PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF125InterPro:Reticulon
TMHMM:TMhelixUniParc:UPI000221B8F2EnsemblPlantsGene:Zm00001d008982EnsemblPlants:Zm00001d008982_P001EnsemblPlants:Zm00001d008982_T001SEG:seg
Description
Reticulon-like protein B4
Coordinates
chr8:+:28558735..28561301
Molecular Weight (calculated)
30719.2 Da
IEP (calculated)
8.457
GRAVY (calculated)
-0.047
Length
279 amino acids
Sequence
(BLAST)
001: MAEQPQEGGA SPKHESLMEK LADKLHVGGG KGDSSSSDSD RDEPPHPSAP PTDEVKQPSF SDSTATAAAE AKAKVFRLFG REQPIHKALG GGKPADVFLW
101: RNRNISAGVL GGATAIWILF ELLGYHLLTF VCHGLIFSLG VLFLWSNASS FIHKSPPKIP EVVIPEDLVV NIAVSTRYEI NRAFANLRRI ALGRDIKKFL
201: MVIAGLWLLS VLGSCCNLLT LVYIVFVVLH TVPVLYEKYE DQIDTYGEKG WVEIKKQYAV FDEKVLSKVP RGPAKDKKH
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.