Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020624_P002 | Maize | plastid | 66.67 | 70.42 |
| CDY07042 | Canola | cytosol | 44.0 | 33.0 |
| CDX93221 | Canola | cytosol | 44.0 | 33.0 |
| Solyc04g072110.2.1 | Tomato | cytosol | 24.0 | 30.0 |
| CDY20503 | Canola | endoplasmic reticulum | 42.67 | 27.35 |
| OQU81657 | Sorghum | plasma membrane | 61.33 | 23.96 |
| GSMUA_Achr5P23170_001 | Banana | golgi, peroxisome, plastid | 56.0 | 23.2 |
| Os04t0446300-01 | Rice | plasma membrane, plastid | 58.67 | 22.92 |
| KRH14989 | Soybean | endoplasmic reticulum, mitochondrion | 56.0 | 22.83 |
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 56.0 | 22.7 |
| KRH73149 | Soybean | endoplasmic reticulum | 54.67 | 22.28 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 53.33 | 20.83 |
| TraesCS2A01G314500.1 | Wheat | golgi | 53.33 | 20.83 |
| TraesCS2B01G332900.1 | Wheat | golgi | 52.0 | 20.31 |
| PGSC0003DMT400064539 | Potato | golgi | 50.67 | 19.9 |
| CDY60993 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 50.67 | 19.69 |
| AT4G04200.1 | Thale cress | cytosol, golgi, plasma membrane | 49.33 | 19.47 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 49.33 | 19.27 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 49.33 | 18.97 |
| CDY24940 | Canola | cytosol | 48.0 | 18.75 |
| CDY24935 | Canola | cytosol | 48.0 | 18.75 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 53.33 | 18.52 |
| Bra004998.1-P | Field mustard | cytosol | 48.0 | 18.18 |
| CDX74817 | Canola | cytosol | 48.0 | 17.22 |
| Bra017043.1-P | Field mustard | cytosol | 48.0 | 16.59 |
| CDY07043 | Canola | cytosol | 8.0 | 5.83 |
| CDX93220 | Canola | cytosol | 6.67 | 5.75 |
| CDY20504 | Canola | cytosol | 5.33 | 4.08 |
| HORVU4Hr1G058460.1 | Barley | golgi | 2.67 | 1.96 |
Protein Annotations
| EnsemblPlants:Zm00001d013600_P001 | EnsemblPlants:Zm00001d013600_T001 | EnsemblPlantsGene:Zm00001d013600 | ProteinID:AQK63943.1 | UniParc:UPI0008436F08 | UniProt:A0A1D6GKU2 |
| MapMan:18.10.1.1.3 | : | : | : | : | : |
Description
Probable signal peptidase complex subunit 2
Coordinates
chr5:-:15124314..15125879
Molecular Weight (calculated)
8360.7 Da
IEP (calculated)
4.281
GRAVY (calculated)
-0.411
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MDLDPEGIFR DDSDEDEDSV KGSFSSNGLT VSSKFPRFSD MYTLTIASVN PQSIAANKPI HFTKSVTKWY VPIDL
001: MEEKKTESAT KNVKKVNLLD HIAIKHLLDE SVSDIVTSRG YKEDVRLSNV KFLLGGIIIV VALVAQFYNK KCGICLLLDF GKYVVLTAVM QLILYIKEKN
101: AILFTYPLEG SFTSTGLVVS SKLPRFSDQY TLTIDSADPQ SISAGKSVQF TKSVTQWLTK DGVLVEGLFW KDVEALVKEY TEAGEPKKKR
101: AILFTYPLEG SFTSTGLVVS SKLPRFSDQY TLTIDSADPQ SISAGKSVQF TKSVTQWLTK DGVLVEGLFW KDVEALVKEY TEAGEPKKKR
Arabidopsis Description
Microsomal signal peptidase 25 kDa subunit (SPC25) [Source:UniProtKB/TrEMBL;Acc:F4JGB4]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.