Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- endoplasmic reticulum 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P06860_001 | |
| GSMUA_Achr4P10230_001 | |
| GSMUA_Achr8P30160_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39960.1 | GSMUA_Achr2P06860_001 | AT3G15710.1 | 21798944 |
| AT2G39960.1 | GSMUA_Achr8P30160_001 | AT3G15710.1 | 21798944 |
| AT2G39960.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 88.4 | 86.49 |
| KRH73149 | Soybean | endoplasmic reticulum | 77.9 | 76.63 |
| KRH14989 | Soybean | endoplasmic reticulum, mitochondrion | 77.9 | 76.63 |
| CDX93221 | Canola | cytosol | 40.33 | 73.0 |
| CDY07042 | Canola | cytosol | 39.78 | 72.0 |
| PGSC0003DMT400064539 | Potato | golgi | 75.69 | 71.73 |
| Os04t0446300-01 | Rice | plasma membrane, plastid | 74.59 | 70.31 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 75.69 | 70.26 |
| CDY20503 | Canola | endoplasmic reticulum | 45.3 | 70.09 |
| OQU81657 | Sorghum | plasma membrane | 73.48 | 69.27 |
| TraesCS2A01G314500.1 | Wheat | golgi | 72.93 | 68.75 |
| Solyc04g072110.2.1 | Tomato | cytosol | 22.65 | 68.33 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 72.38 | 68.23 |
| TraesCS2B01G332900.1 | Wheat | golgi | 72.38 | 68.23 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 70.72 | 66.67 |
| Os02t0565200-01 | Rice | golgi, plasma membrane, plastid | 70.17 | 66.49 |
| Bra004998.1-P | Field mustard | cytosol | 71.27 | 65.15 |
| CDY60993 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 67.4 | 63.21 |
| CDY24935 | Canola | cytosol | 66.3 | 62.5 |
| CDY24940 | Canola | cytosol | 66.3 | 62.5 |
| Zm00001d020624_P002 | Maize | plastid | 24.31 | 61.97 |
| CDX74817 | Canola | cytosol | 71.27 | 61.72 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 73.48 | 61.57 |
| AT4G04200.1 | Thale cress | cytosol, golgi, plasma membrane | 62.43 | 59.47 |
| CDX93220 | Canola | cytosol | 27.07 | 56.32 |
| Zm00001d013600_P001 | Maize | cytosol | 23.2 | 56.0 |
| CDY07043 | Canola | cytosol | 30.94 | 54.37 |
| CDY20504 | Canola | cytosol | 27.62 | 51.02 |
| Bra017043.1-P | Field mustard | cytosol | 53.04 | 44.24 |
| HORVU4Hr1G058460.1 | Barley | golgi | 21.55 | 38.24 |
Protein Annotations
| MapMan:18.10.1.1.3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr5G23170_001 | EnsemblPlants:GSMUA_Achr5P23170_001 | EnsemblPlants:GSMUA_Achr5T23170_001 | UniProt:M0T0Z2 | PFAM:PF06703 | PANTHER:PTHR13085 |
| InterPro:SigPept_cplx_su2 | TMHMM:TMhelix | UniParc:UPI000296B6A7 | SEG:seg | : | : |
Description
Probable signal peptidase complex subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G23170_001]
Coordinates
chr5:+:24979287..24982271
Molecular Weight (calculated)
20336.6 Da
IEP (calculated)
9.891
GRAVY (calculated)
-0.134
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSGAAKNP KKANLVDHYS IKHLLDESVT EVVKSQGYAE DVRLSNVRLL IGSIIIAIAL LAQFYPKKFP ENRDFLYVVF NGLLQFISYT KEKNAFLFTY
101: PPPGSFNSTG LIVSSKLPRF SDMYTLTIAS ADPKSISANK PVVLTKSVTK WFTKDGLLVE GLFWKDVERL MDDYNGDRKN K
101: PPPGSFNSTG LIVSSKLPRF SDMYTLTIAS ADPKSISANK PVVLTKSVTK WFTKDGLLVE GLFWKDVERL MDDYNGDRKN K
001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
Arabidopsis Description
Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.