Factsheet for Bra004998.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra021131.1-P
Bra027214.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39960.1	Bra030034.1-P	AT1G27300.1	21798944
AT2G39960.1	Bra032817.1-P	AT1G27300.1	21798944
AT2G39960.1	Bra021131.1-P	AT3G15710.1	21798944
AT2G39960.1	Bra027214.1-P	AT3G15710.1	21798944
AT2G39960.1	Bra012567.1-P	AT4G19030.1	21798944
AT2G39960.1	Bra013361.1-P	AT4G19030.1	21798944
AT2G39960.1	Bra002403.1-P	AT5G22290.1	21798944
AT2G39960.1	Bra006619.1-P	AT5G22290.1	21798944
AT2G39960.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G39960.1	Thale cress	cytosol, golgi, plasma membrane	91.92	94.79
CDX74817	Canola	cytosol	94.44	89.47
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	71.72	77.17
KRH73149	Soybean	endoplasmic reticulum	71.72	77.17
Solyc04g072110.2.1	Tomato	cytosol	21.72	71.67
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	65.15	71.27
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	65.66	70.27
PGSC0003DMT400064539	Potato	golgi	66.67	69.11
VIT_13s0019g03400.t01	Wine grape	plasma membrane	67.68	68.72
OQU81657	Sorghum	plasma membrane	62.12	64.06
Os04t0446300-01	Rice	plasma membrane, plastid	62.12	64.06
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	59.6	61.78
TraesCS2A01G314500.1	Wheat	golgi	59.6	61.46
Bra017043.1-P	Field mustard	cytosol	67.17	61.29
TraesCS2D01G312700.1	Wheat	plasma membrane	59.09	60.94
TraesCS2B01G332900.1	Wheat	golgi	58.59	60.42
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	60.61	55.56
Zm00001d020624_P002	Maize	plastid	19.19	53.52
Zm00001d013600_P001	Maize	cytosol	18.18	48.0
HORVU4Hr1G058460.1	Barley	golgi	19.19	37.25

Protein Annotations

MapMan:18.10.1.1.3	EnsemblPlantsGene:Bra004998	EnsemblPlants:Bra004998.1	EnsemblPlants:Bra004998.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787
GO:GO:0006465	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	UniProt:M4CLB1	PFAM:PF06703	PANTHER:PTHR13085
InterPro:SigPept_cplx_su2	TMHMM:TMhelix	UniParc:UPI00025472F3	SEG:seg	:	:

Description

AT2G39960 (E=1e-093) | microsomal signal peptidase 25 kDa subunit, putative (SPC25)

Coordinates

chrA05:+:2893395..2894982

Molecular Weight (calculated)

22394.0 Da

IEP (calculated)

9.385

GRAVY (calculated)

-0.226

Length

198 amino acids

Sequence
(BLAST)

001: MEEKKAESTN KNVKKANLLE HNSIKHILDE SVSDIVKSRG YKEDVRLSNL KLILGTVIIV VALVAQFYNK KFPENRDFLI GCIASFFDYD KYVVLNGVLQ
101: LILYTKEKNA ILFTYPPEGS FTSTGLVVSS KLPRFSDEYT LTIDSADPKS ISAGKSVQLT KSVTQWFTKD GVLVEGLFWK DVEALIKDYA KEEPKKKK

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.