Factsheet for VIT_13s0019g03400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0080g00970.t01
VIT_09s0002g06550.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39960.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT2G39960.1	VIT_09s0002g06550.t01	AT3G15710.1	21798944
AT2G39960.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT2G39960.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73149	Soybean	endoplasmic reticulum	76.92	81.52
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	76.92	81.52
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	70.26	75.69
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	71.79	75.68
PGSC0003DMT400064539	Potato	golgi	73.85	75.39
CDY07042	Canola	cytosol	37.95	74.0
CDX93221	Canola	cytosol	37.44	73.0
AT2G39960.1	Thale cress	cytosol, golgi, plasma membrane	69.74	70.83
Solyc04g072110.2.1	Tomato	cytosol	21.54	70.0
CDY20503	Canola	endoplasmic reticulum	41.54	69.23
CDY60993	Canola	cytosol, endoplasmic reticulum, plasma membrane	67.69	68.39
Bra004998.1-P	Field mustard	cytosol	68.72	67.68
CDY24935	Canola	cytosol	64.62	65.62
CDY24940	Canola	cytosol	64.62	65.62
CDX74817	Canola	cytosol	69.23	64.59
CDX93220	Canola	cytosol	28.72	64.37
TraesCS2A01G314500.1	Wheat	golgi	62.56	63.54
TraesCS2B01G332900.1	Wheat	golgi	62.05	63.02
TraesCS2D01G312700.1	Wheat	plasma membrane	62.05	63.02
Os04t0446300-01	Rice	plasma membrane, plastid	62.05	63.02
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	61.54	62.83
AT4G04200.1	Thale cress	cytosol, golgi, plasma membrane	60.51	62.11
OQU81657	Sorghum	plasma membrane	60.51	61.46
CDY07043	Canola	cytosol	30.77	58.25
CDY20504	Canola	cytosol	29.23	58.16
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	62.56	56.48
Zm00001d020624_P002	Maize	plastid	19.49	53.52
Zm00001d013600_P001	Maize	cytosol	18.97	49.33
Bra017043.1-P	Field mustard	cytosol	50.77	45.62
HORVU4Hr1G058460.1	Barley	golgi	19.49	37.25

Protein Annotations

EntrezGene:100256412	wikigene:100256412	MapMan:18.10.1.1.3	ProteinID:CBI31534	ProteinID:CBI31534.3	UniProt:D7TMG7
EMBL:FN595998	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0045047	EntrezGene:LOC100256412	wikigene:LOC100256412	PFAM:PF06703	PANTHER:PTHR13085
InterPro:SigPept_cplx_su2	TIGR:TC61708	TMHMM:TMhelix	UniParc:UPI000198479E	ArrayExpress:VIT_13s0019g03400	EnsemblPlantsGene:VIT_13s0019g03400
EnsemblPlants:VIT_13s0019g03400.t01	unigene:Vvi.3129	RefSeq:XP_002279539	RefSeq:XP_002279539.1	RefSeq:XP_003633467	RefSeq:XP_003633467.1
RefSeq:XP_003633468	RefSeq:XP_003633468.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:-:4447930..4452695

Molecular Weight (calculated)

22198.0 Da

IEP (calculated)

8.757

GRAVY (calculated)

-0.049

Length

195 amino acids

Sequence
(BLAST)

001: MASNNNNSNK NPKKANLLDH HSIKHILDEY VSEIVTSRGY VEDVRMSNVR LLMGSIIIII ALVAQFYPKK FPENRDFLIV CILLYPFCCY ILFNGLLQLI
101: IYTKEKNAIL FTHPPEGFFN STGLVVSSKL PRFSDLYTLS IASADPKSKA AKDPVEFTKS VTQWFTTDGI LVEGLFWKDV EGLINDYARE PKKNK

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.