CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
golgi 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07043	Canola	cytosol	94.25	79.61
CDY20504	Canola	cytosol	87.36	77.55
CDY60993	Canola	cytosol, endoplasmic reticulum, plasma membrane	88.51	39.9
CDX74817	Canola	cytosol	90.8	37.8
CDY24935	Canola	cytosol	74.71	33.85
CDY24940	Canola	cytosol	74.71	33.85
AT4G04200.1	Thale cress	cytosol, golgi, plasma membrane	71.26	32.63
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	64.37	30.43
KRH73149	Soybean	endoplasmic reticulum	63.22	29.89
VIT_13s0019g03400.t01	Wine grape	plasma membrane	64.37	28.72
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	60.92	28.65
PGSC0003DMT400064539	Potato	golgi	62.07	28.27
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	56.32	27.07
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	55.17	25.13
OQU81657	Sorghum	plasma membrane	55.17	25.0
Os04t0446300-01	Rice	plasma membrane, plastid	55.17	25.0
TraesCS2A01G314500.1	Wheat	golgi	50.57	22.92
TraesCS2B01G332900.1	Wheat	golgi	50.57	22.92
TraesCS2D01G312700.1	Wheat	plasma membrane	50.57	22.92
HORVU4Hr1G058460.1	Barley	golgi	25.29	21.57
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	52.87	21.3
Zm00001d013600_P001	Maize	cytosol	5.75	6.67
Zm00001d020624_P002	Maize	plastid	4.6	5.63
CDY20503	Canola	endoplasmic reticulum	4.6	3.42
Solyc04g072110.2.1	Tomato	cytosol	2.3	3.33
CDY07042	Canola	cytosol	2.3	2.0
CDX93221	Canola	cytosol	2.3	2.0

Protein Annotations

KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MapMan:18.10.1.1.3	GO:A0A078DV45
EnsemblPlants:CDX93220	ProteinID:CDX93220	ProteinID:CDX93220.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00155175001	PFAM:PF06703	PANTHER:PTHR13085	InterPro:SigPept_cplx_su2
TMHMM:TMhelix	UniParc:UPI0004EEABFB	SEG:seg	:	:	:

Description

BnaC04g46760D

Coordinates

chrLK031875:+:414713..415374

Molecular Weight (calculated)

9792.0 Da

IEP (calculated)

9.141

GRAVY (calculated)

-0.039

Length

87 amino acids

Sequence
(BLAST)

1: MEEKKVESTN KNVKKVNLLD HNSIKHMLDE SVSDIVTSRG YKEDVRLSNM KLILGAVIIA VALVAQFYNK KFPENRDFLI GCIAVIG

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.