CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24940	Canola	cytosol	100.0	100.0
CDY07042	Canola	cytosol	49.48	95.0
CDX93221	Canola	cytosol	47.92	92.0
CDY20503	Canola	endoplasmic reticulum	53.12	87.18
CDY60993	Canola	cytosol, endoplasmic reticulum, plasma membrane	87.5	87.05
CDX74817	Canola	cytosol	86.46	79.43
CDX93220	Canola	cytosol	33.85	74.71
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	70.31	73.37
Solyc04g072110.2.1	Tomato	cytosol	22.92	73.33
KRH73149	Soybean	endoplasmic reticulum	69.79	72.83
CDY20504	Canola	cytosol	35.42	69.39
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	62.5	66.3
CDY07043	Canola	cytosol	35.42	66.02
PGSC0003DMT400064539	Potato	golgi	65.62	65.97
VIT_13s0019g03400.t01	Wine grape	plasma membrane	65.62	64.62
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	61.46	63.78
Os04t0446300-01	Rice	plasma membrane, plastid	59.38	59.38
OQU81657	Sorghum	plasma membrane	59.38	59.38
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	57.29	57.59
TraesCS2A01G314500.1	Wheat	golgi	55.73	55.73
TraesCS2B01G332900.1	Wheat	golgi	55.21	55.21
TraesCS2D01G312700.1	Wheat	plasma membrane	55.21	55.21
Zm00001d020624_P002	Maize	plastid	19.79	53.52
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	56.25	50.0
Zm00001d013600_P001	Maize	cytosol	18.75	48.0
HORVU4Hr1G058460.1	Barley	golgi	13.54	25.49

Protein Annotations

KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MapMan:18.10.1.1.3	GO:A0A078GEJ2
UniProt:A0A078GEJ2	EnsemblPlants:CDY24935	ProteinID:CDY24935	ProteinID:CDY24935.1	ProteinID:CDY24940.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005787	GO:GO:0006465	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00028730001	PFAM:PF06703
PANTHER:PTHR13085	InterPro:SigPept_cplx_su2	TMHMM:TMhelix	UniParc:UPI0004EE35AF	SEG:seg	:

Description

BnaC03g22370DBnaC03g22320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEJ2]

Coordinates

chrLK032166:+:324790..326611

Molecular Weight (calculated)

21689.3 Da

IEP (calculated)

9.194

GRAVY (calculated)

-0.138

Length

192 amino acids

Sequence
(BLAST)

001: MEEKKEESKN KNVKKANLLD HNSIKHILDE SVSDIVTSHG YKEDVRLSNL KLFLGAIIIV VALVAQFYNK KTIMCVMFGF FDYGTYVVLN GVLQLILFTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DEYTLTIDSA DPKSISAGKS VQFTKSVTQW FTKDGVLVEG LFWKDVEALI KDYAKEEPKK KK

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.