Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004998.1-P | Field mustard | cytosol | 89.47 | 94.44 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 86.12 | 93.75 |
| CDY07042 | Canola | cytosol | 43.54 | 91.0 |
| CDX93220 | Canola | cytosol | 37.8 | 90.8 |
| CDY20503 | Canola | endoplasmic reticulum | 50.72 | 90.6 |
| CDX93221 | Canola | cytosol | 43.06 | 90.0 |
| CDY20504 | Canola | cytosol | 41.15 | 87.76 |
| CDY60993 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 80.38 | 87.05 |
| CDY24940 | Canola | cytosol | 79.43 | 86.46 |
| CDY24935 | Canola | cytosol | 79.43 | 86.46 |
| CDY07043 | Canola | cytosol | 40.67 | 82.52 |
| KRH14989 | Soybean | endoplasmic reticulum, mitochondrion | 68.42 | 77.72 |
| KRH73149 | Soybean | endoplasmic reticulum | 68.42 | 77.72 |
| Solyc04g072110.2.1 | Tomato | cytosol | 20.57 | 71.67 |
| GSMUA_Achr5P23170_001 | Banana | golgi, peroxisome, plastid | 61.72 | 71.27 |
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 62.68 | 70.81 |
| PGSC0003DMT400064539 | Potato | golgi | 63.64 | 69.63 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 64.59 | 69.23 |
| Os04t0446300-01 | Rice | plasma membrane, plastid | 59.33 | 64.58 |
| OQU81657 | Sorghum | plasma membrane | 59.33 | 64.58 |
| Os02t0565200-01 | Rice | golgi, plasma membrane, plastid | 56.94 | 62.3 |
| TraesCS2A01G314500.1 | Wheat | golgi | 56.94 | 61.98 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 56.46 | 61.46 |
| TraesCS2B01G332900.1 | Wheat | golgi | 55.98 | 60.94 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 57.89 | 56.02 |
| Zm00001d020624_P002 | Maize | plastid | 18.18 | 53.52 |
| Zm00001d013600_P001 | Maize | cytosol | 17.22 | 48.0 |
| HORVU4Hr1G058460.1 | Barley | golgi | 18.66 | 38.24 |
Protein Annotations
| KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- | KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MapMan:18.10.1.1.3 | GO:A0A078CD81 |
| EnsemblPlants:CDX74817 | ProteinID:CDX74817 | ProteinID:CDX74817.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00116791001 | PFAM:PF06703 | PANTHER:PTHR13085 | InterPro:SigPept_cplx_su2 |
| TMHMM:TMhelix | UniParc:UPI0004EED693 | : | : | : | : |
Description
BnaA05g05630D
Coordinates
chrLK031802:+:797490..799344
Molecular Weight (calculated)
23633.6 Da
IEP (calculated)
8.938
GRAVY (calculated)
-0.170
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKKAESTN KNVKKANLLE HNSIKHILDE SVSDIVKSRG YKEDVRLSNM KLILGTVIIV VALVAQFYNK KFPENRDFLI GCIASYPFLL LWIDCLDRET
101: TYVVLNGVLQ LILYTKEKNA ILFTYPPEGS FTSTGLVVSS KLPRFSDEYT LTIDSADPKS ISAGKSVQLT KSVTQWFTKD GVLVEGLFWK DVEALIKDYA
201: KEGEPKKKK
101: TYVVLNGVLQ LILYTKEKNA ILFTYPPEGS FTSTGLVVSS KLPRFSDEYT LTIDSADPKS ISAGKSVQLT KSVTQWFTKD GVLVEGLFWK DVEALIKDYA
201: KEGEPKKKK
001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
Arabidopsis Description
Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.