Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH73149 | Soybean | endoplasmic reticulum | 95.65 | 95.65 |
| CDY07042 | Canola | cytosol | 44.02 | 81.0 |
| CDX93221 | Canola | cytosol | 43.48 | 80.0 |
| GSMUA_Achr5P23170_001 | Banana | golgi, peroxisome, plastid | 76.63 | 77.9 |
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 77.72 | 77.3 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 81.52 | 76.92 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 78.8 | 75.52 |
| PGSC0003DMT400064539 | Potato | golgi | 78.26 | 75.39 |
| CDY20503 | Canola | endoplasmic reticulum | 47.83 | 75.21 |
| Solyc04g072110.2.1 | Tomato | cytosol | 23.91 | 73.33 |
| CDY60993 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 76.63 | 73.06 |
| Bra004998.1-P | Field mustard | cytosol | 77.17 | 71.72 |
| CDY24935 | Canola | cytosol | 73.37 | 70.31 |
| CDY24940 | Canola | cytosol | 73.37 | 70.31 |
| Os04t0446300-01 | Rice | plasma membrane, plastid | 71.74 | 68.75 |
| CDX74817 | Canola | cytosol | 77.72 | 68.42 |
| Os02t0565200-01 | Rice | golgi, plasma membrane, plastid | 70.11 | 67.54 |
| OQU81657 | Sorghum | plasma membrane | 69.57 | 66.67 |
| TraesCS2A01G314500.1 | Wheat | golgi | 69.02 | 66.15 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 68.48 | 65.62 |
| TraesCS2B01G332900.1 | Wheat | golgi | 68.48 | 65.62 |
| CDX93220 | Canola | cytosol | 30.43 | 64.37 |
| AT4G04200.1 | Thale cress | cytosol, golgi, plasma membrane | 66.3 | 64.21 |
| Zm00001d020624_P002 | Maize | plastid | 23.37 | 60.56 |
| CDY20504 | Canola | cytosol | 31.52 | 59.18 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 69.02 | 58.8 |
| CDY07043 | Canola | cytosol | 32.61 | 58.25 |
| Zm00001d013600_P001 | Maize | cytosol | 22.83 | 56.0 |
| Bra017043.1-P | Field mustard | cytosol | 57.07 | 48.39 |
| HORVU4Hr1G058460.1 | Barley | golgi | 20.65 | 37.25 |
Protein Annotations
| EntrezGene:100305648 | MapMan:18.10.1.1.3 | EMBL:ACUP02008549 | EMBL:BT089359 | UniProt:C6SW16 | EnsemblPlantsGene:GLYMA_14G061900 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0045047 | EnsemblPlants:KRH14989 | ProteinID:KRH14989 | ProteinID:KRH14989.1 | ProteinID:KRH14990.1 | PFAM:PF06703 |
| PANTHER:PTHR13085 | InterPro:SigPept_cplx_su2 | TMHMM:TMhelix | UniParc:UPI0001B159F2 | : | : |
Description
hypothetical protein
Coordinates
chr14:+:5030684..5034460
Molecular Weight (calculated)
20704.4 Da
IEP (calculated)
9.817
GRAVY (calculated)
0.157
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKVPKKAN LLDHHSIKHI LDESVSEVVT SRGYVEDVRL SNARLFIGAI IIVIALFAQF YKKKFPENRD FLIACIALYV IFNGLLQLII YTKEKNAILF
101: TYPPVGSFTS TGLVVSSKLP RFSDMYTLTI ASADPKSISA NEPVHFTKSV TQWFTKDGIL VEGLFWKDVE ALIVQYTKEP KKGK
101: TYPPVGSFTS TGLVVSSKLP RFSDMYTLTI ASADPKSISA NEPVHFTKSV TQWFTKDGIL VEGLFWKDVE ALIVQYTKEP KKGK
001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
Arabidopsis Description
Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.