Factsheet for Bra017043.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07042	Canola	cytosol	45.16	98.0
Solyc04g072110.2.1	Tomato	cytosol	19.82	71.67
Bra004998.1-P	Field mustard	cytosol	61.29	67.17
KRH73149	Soybean	endoplasmic reticulum	48.85	57.61
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	48.39	57.07
Zm00001d020624_P002	Maize	plastid	17.51	53.52
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	44.24	53.04
PGSC0003DMT400064539	Potato	golgi	46.54	52.88
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	44.7	52.43
VIT_13s0019g03400.t01	Wine grape	plasma membrane	45.62	50.77
OQU81657	Sorghum	plasma membrane	44.7	50.52
Os04t0446300-01	Rice	plasma membrane, plastid	44.24	50.0
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	42.4	48.17
Zm00001d013600_P001	Maize	cytosol	16.59	48.0
TraesCS2A01G314500.1	Wheat	golgi	42.4	47.92
TraesCS2D01G312700.1	Wheat	plasma membrane	41.94	47.4
TraesCS2B01G332900.1	Wheat	golgi	41.47	46.88
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	42.86	43.06
HORVU4Hr1G058460.1	Barley	golgi	6.91	14.71

Protein Annotations

MapMan:18.10.1.1.3	EnsemblPlantsGene:Bra017043	EnsemblPlants:Bra017043.1	EnsemblPlants:Bra017043.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787
GO:GO:0006465	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	UniProt:M4DKL2	PFAM:PF06703	PANTHER:PTHR13085
InterPro:SigPept_cplx_su2	TMHMM:TMhelix	UniParc:UPI0002544D6F	:	:	:

Description

AT2G39960 (E=3e-037) | microsomal signal peptidase 25 kDa subunit, putative (SPC25)

Coordinates

chrA04:-:16966162..16967743

Molecular Weight (calculated)

24541.4 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.219

Length

217 amino acids

Sequence
(BLAST)

001: MEEKKAESTN KNAKKVNLLD HNSIKHMLDE SVSDVSHILT LRFLHILRSV KYDHPFVLCV DRYEPWVQGG REAEQHEADL RDGYHRVLNG VMQLILFTKE
101: KNAILFTYPL EIKSGNMALA ALVSLVFAIG AVLFFDNGSF TSTGLVVSSK LPRFSDEYTL TIDSADPKSI SAGKSVQFTK SVTQWFTKEG VLVEGLFWKD
201: VEALIKDYAN EEPKKQK

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.