Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G057530.2 | |
| HORVU2Hr1G084420.1 | |
| HORVU5Hr1G109380.2 | |
| HORVU7Hr1G088900.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G314500.1 | Wheat | golgi | 59.8 | 31.77 |
| TraesCS2B01G332900.1 | Wheat | golgi | 59.8 | 31.77 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 58.82 | 31.25 |
| Os04t0446300-01 | Rice | plasma membrane, plastid | 55.88 | 29.69 |
| OQU81657 | Sorghum | plasma membrane | 55.88 | 29.69 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 60.78 | 28.7 |
| CDX93220 | Canola | cytosol | 21.57 | 25.29 |
| CDY20504 | Canola | cytosol | 22.55 | 23.47 |
| CDY07043 | Canola | cytosol | 23.53 | 23.3 |
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 40.2 | 22.16 |
| GSMUA_Achr5P23170_001 | Banana | golgi, peroxisome, plastid | 38.24 | 21.55 |
| KRH73149 | Soybean | endoplasmic reticulum | 38.24 | 21.2 |
| KRH14989 | Soybean | endoplasmic reticulum, mitochondrion | 37.25 | 20.65 |
| PGSC0003DMT400064539 | Potato | golgi | 37.25 | 19.9 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 37.25 | 19.49 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 36.27 | 19.27 |
| Bra004998.1-P | Field mustard | cytosol | 37.25 | 19.19 |
| CDX74817 | Canola | cytosol | 38.24 | 18.66 |
| CDY60993 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 31.37 | 16.58 |
| CDY20503 | Canola | endoplasmic reticulum | 16.67 | 14.53 |
| CDY24940 | Canola | cytosol | 25.49 | 13.54 |
| CDY24935 | Canola | cytosol | 25.49 | 13.54 |
| AT4G04200.1 | Thale cress | cytosol, golgi, plasma membrane | 23.53 | 12.63 |
| CDX93221 | Canola | cytosol | 9.8 | 10.0 |
| CDY07042 | Canola | cytosol | 8.82 | 9.0 |
| Bra017043.1-P | Field mustard | cytosol | 14.71 | 6.91 |
| Zm00001d013600_P001 | Maize | cytosol | 1.96 | 2.67 |
| Zm00001d020624_P002 | Maize | plastid | 0.98 | 1.41 |
| Solyc04g072110.2.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:18.10.1.1.3 | UniProt:A0A287P8M5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:HORVU4Hr1G058460 | EnsemblPlants:HORVU4Hr1G058460.1 | PFAM:PF06703 | PANTHER:PTHR13085 |
| InterPro:SigPept_cplx_su2 | TMHMM:TMhelix | UniParc:UPI000B487DEF | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr4H:+:489161356..489162120
Molecular Weight (calculated)
7684.9 Da
IEP (calculated)
9.663
GRAVY (calculated)
0.644
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXKLL IGTVVIAIAL LAQFYPKKFP QNREFLLGCI ALYVVMNVVL LILSYTKEKD AIIFTHPPAI
101: AF
101: AF
001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
Arabidopsis Description
Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.