CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93220	Canola	cytosol	77.55	87.36
CDY07043	Canola	cytosol	84.69	80.58
CDY60993	Canola	cytosol, endoplasmic reticulum, plasma membrane	81.63	41.45
CDX74817	Canola	cytosol	87.76	41.15
CDY24935	Canola	cytosol	69.39	35.42
CDY24940	Canola	cytosol	69.39	35.42
AT4G04200.1	Thale cress	cytosol, golgi, plasma membrane	63.27	32.63
KRH14989	Soybean	endoplasmic reticulum, mitochondrion	59.18	31.52
KRH73149	Soybean	endoplasmic reticulum	58.16	30.98
VIT_13s0019g03400.t01	Wine grape	plasma membrane	58.16	29.23
GSMUA_Achr7P18540_001	Banana	golgi, peroxisome, plasma membrane	54.08	28.65
PGSC0003DMT400064539	Potato	golgi	55.1	28.27
GSMUA_Achr5P23170_001	Banana	golgi, peroxisome, plastid	51.02	27.62
Os02t0565200-01	Rice	golgi, plasma membrane, plastid	48.98	25.13
OQU81657	Sorghum	plasma membrane	48.98	25.0
Os04t0446300-01	Rice	plasma membrane, plastid	48.98	25.0
TraesCS2A01G314500.1	Wheat	golgi	46.94	23.96
TraesCS2B01G332900.1	Wheat	golgi	45.92	23.44
TraesCS2D01G312700.1	Wheat	plasma membrane	45.92	23.44
HORVU4Hr1G058460.1	Barley	golgi	23.47	22.55
HORVU2Hr1G078290.3	Barley	golgi, mitochondrion, plastid	48.98	22.22
Zm00001d020624_P002	Maize	plastid	5.1	7.04
Zm00001d013600_P001	Maize	cytosol	4.08	5.33
CDY07042	Canola	cytosol	4.08	4.0
CDX93221	Canola	cytosol	4.08	4.0
CDY20503	Canola	endoplasmic reticulum	4.08	3.42
Solyc04g072110.2.1	Tomato	cytosol	2.04	3.33

Protein Annotations

KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MapMan:18.10.1.1.3	GO:A0A078G577
UniProt:A0A078G577	EnsemblPlants:CDY20504	ProteinID:CDY20504	ProteinID:CDY20504.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787
GO:GO:0006465	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00012608001	PFAM:PF06703	PANTHER:PTHR13085
InterPro:SigPept_cplx_su2	TMHMM:TMhelix	UniParc:UPI0004EE1718	:	:	:

Description

BnaC04g05400DBnaC04g05400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G577]

Coordinates

chrLK032108:-:559669..560139

Molecular Weight (calculated)

11315.9 Da

IEP (calculated)

9.181

GRAVY (calculated)

-0.068

Length

98 amino acids

Sequence
(BLAST)

1: MEEKKAESTN KNVKKANLLE HNSIKHILDE SVSDIVRSRG YKEDVRLSNL KLILGTVIIV VALVAQFYNK KFPENRDFLI GCIASYPFLL LWIHCLDR

Best Arabidopsis Sequence Match ( AT2G39960.1 )
(BLAST)

001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK

Arabidopsis Description

Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.