Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39960.1 | EES05123 | AT1G27300.1 | 21798944 |
| AT2G39960.1 | EES07797 | AT3G15710.1 | 21798944 |
| AT2G39960.1 | EES16720 | AT3G15710.1 | 21798944 |
| AT2G39960.1 | EES19438 | AT3G15710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0446300-01 | Rice | plasma membrane, plastid | 92.71 | 92.71 |
| TraesCS2A01G314500.1 | Wheat | golgi | 88.54 | 88.54 |
| TraesCS2D01G312700.1 | Wheat | plasma membrane | 88.02 | 88.02 |
| TraesCS2B01G332900.1 | Wheat | golgi | 87.5 | 87.5 |
| HORVU2Hr1G078290.3 | Barley | golgi, mitochondrion, plastid | 88.54 | 78.7 |
| GSMUA_Achr7P18540_001 | Banana | golgi, peroxisome, plasma membrane | 71.35 | 74.05 |
| GSMUA_Achr5P23170_001 | Banana | golgi, peroxisome, plastid | 69.27 | 73.48 |
| CDX93221 | Canola | cytosol | 37.5 | 72.0 |
| CDY07042 | Canola | cytosol | 37.5 | 72.0 |
| Solyc04g072110.2.1 | Tomato | cytosol | 21.88 | 70.0 |
| KRH73149 | Soybean | endoplasmic reticulum | 66.67 | 69.57 |
| KRH14989 | Soybean | endoplasmic reticulum, mitochondrion | 66.67 | 69.57 |
| Zm00001d020624_P002 | Maize | plastid | 25.0 | 67.61 |
| CDY20503 | Canola | endoplasmic reticulum | 41.15 | 67.52 |
| PGSC0003DMT400064539 | Potato | golgi | 65.1 | 65.44 |
| AT2G39960.1 | Thale cress | cytosol, golgi, plasma membrane | 63.02 | 63.02 |
| Bra004998.1-P | Field mustard | cytosol | 64.06 | 62.12 |
| Zm00001d013600_P001 | Maize | cytosol | 23.96 | 61.33 |
| CDY60993 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 61.46 | 61.14 |
| VIT_13s0019g03400.t01 | Wine grape | plasma membrane | 61.46 | 60.51 |
| CDY24940 | Canola | cytosol | 59.38 | 59.38 |
| CDY24935 | Canola | cytosol | 59.38 | 59.38 |
| CDX74817 | Canola | cytosol | 64.58 | 59.33 |
| AT4G04200.1 | Thale cress | cytosol, golgi, plasma membrane | 55.73 | 56.32 |
| HORVU4Hr1G058460.1 | Barley | golgi | 29.69 | 55.88 |
| CDX93220 | Canola | cytosol | 25.0 | 55.17 |
| CDY07043 | Canola | cytosol | 27.08 | 50.49 |
| CDY20504 | Canola | cytosol | 25.0 | 48.98 |
| Bra017043.1-P | Field mustard | cytosol | 50.52 | 44.7 |
Protein Annotations
| MapMan:18.10.1.1.3 | EntrezGene:8065833 | UniProt:A0A1Z5RD73 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0019538 | EnsemblPlants:OQU81657 | ProteinID:OQU81657 | ProteinID:OQU81657.1 | PFAM:PF06703 |
| PANTHER:PTHR13085 | EnsemblPlantsGene:SORBI_3006G095200 | InterPro:SigPept_cplx_su2 | TMHMM:TMhelix | UniParc:UPI0001A87243 | RefSeq:XP_002447918.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:46524924..46527903
Molecular Weight (calculated)
21199.7 Da
IEP (calculated)
9.648
GRAVY (calculated)
-0.053
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDGAAATP AKVTPKKANL LDPYSIKHLL DETISDVVKN KGYTEDTRLG NWKLGIGAAV IAVALLAQFY PKKFPQNREF LLGCIALYVV LNVVLLILSY
101: TKEKDAILFT HPPAGSFNST GLTISSKLPR FSDMYTLTIA SADPQSISAN KPVHFTKSVT KWFTKEGVLV EGLFWKDVEK LIDDYNSERK SK
101: TKEKDAILFT HPPAGSFNST GLTISSKLPR FSDMYTLTIA SADPQSISAN KPVHFTKSVT KWFTKEGVLV EGLFWKDVEK LIDDYNSERK SK
001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
Arabidopsis Description
Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P58684]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.